Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10864
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0810 - 19902049-19902069,19902195-19902400,19902523-199025... 37 0.016
08_01_0053 + 365188-365376,365451-365729,365818-367341 37 0.020
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559... 33 0.25
03_02_0529 + 9218734-9218793,9218898-9220050,9220133-9220192,922... 32 0.58
12_01_1034 - 10638984-10639376,10639905-10640093 30 1.8
12_02_0388 - 18486957-18487016,18487286-18489418,18489985-184904... 29 3.1
12_02_0390 - 18510095-18510148,18510318-18512450,18513018-185136... 29 5.4
08_02_1180 + 24980042-24980784,24980874-24981168,24981650-249818... 28 7.2
06_03_1501 + 30612643-30613310,30613396-30613501,30613732-306139... 28 7.2
>04_03_0810 -
19902049-19902069,19902195-19902400,19902523-19902559,
19902623-19902675,19903149-19903226,19903496-19903586,
19903773-19903917,19903988-19904227,19904313-19904523,
19904788-19905232
Length = 508
Score = 37.1 bits (82), Expect = 0.016
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = +3
Query: 21 KINTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFN 200
+IN +YLDTT+ N + FP ++D I V K+++ EP I + + G E V+
Sbjct: 283 QINLLYLDTTYCNPKY-KFPPKEDVIDFAVRTAKRYLQKEPKTLIVVGAYS-IGKENVYL 340
Query: 201 EIYNILNMKTY 233
I L + Y
Sbjct: 341 AISKALQVPIY 351
>08_01_0053 + 365188-365376,365451-365729,365818-367341
Length = 663
Score = 36.7 bits (81), Expect = 0.020
Identities = 24/72 (33%), Positives = 34/72 (47%)
Frame = +3
Query: 33 IYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIYN 212
++LD TF S +FP + DSIR ++N I W P + S G E + E+
Sbjct: 134 VFLDCTFAACSL-HFPSKDDSIRQVINCI--W--KHPNAPVVYLVSDMLGQEEILMEVSK 188
Query: 213 ILNMKTYVSDDK 248
+ K YV DK
Sbjct: 189 VFGSKIYVDRDK 200
>01_06_0293 -
28254673-28254878,28255189-28255306,28255767-28255961,
28256701-28256800,28256887-28256972,28257078-28257239,
28257965-28258101,28258233-28258281,28258688-28258746,
28258862-28258896,28259384-28259433,28260173-28260332,
28260898-28260963,28261065-28261162,28261649-28261696,
28262114-28262242,28262667-28262769,28262858-28262954,
28263181-28263241,28263659-28263740,28263845-28263962,
28264039-28266325
Length = 1481
Score = 33.1 bits (72), Expect = 0.25
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +3
Query: 18 IKINTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQ 125
I + ++LDTT+ N F FP +K+S+ +VN IK+
Sbjct: 184 IGADAVFLDTTYCNPKF-TFPPQKESLEYVVNSIKR 218
>03_02_0529 +
9218734-9218793,9218898-9220050,9220133-9220192,
9220284-9220363,9220486-9220730,9220815-9221138,
9221211-9221274,9221968-9222144
Length = 720
Score = 31.9 bits (69), Expect = 0.58
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 483 KHTYITPSRLSKGEFSLSIERCLIAEKITFKYFWFALCSGKHL 355
KH + P+R+ KG+ S S E C I TF +F G H+
Sbjct: 289 KHRKVAPARMHKGDLSYSGEHCEI--PFTFSFFEEHCIDGTHI 329
>12_01_1034 - 10638984-10639376,10639905-10640093
Length = 193
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +3
Query: 6 DNMPIKINT-IYLDTTFQNESFDNFPRRKDS--IRMLVNHIKQWVDGEPTNRIALHTSAR 176
D MP+ N + L + + FP+ D I M V+++ +WV+G P + R
Sbjct: 82 DTMPLTYNLQVKLFDVWGIDFIGPFPKSYDCEYILMAVDYVSKWVEGMPCRATEAKHACR 141
Query: 177 YGYEFVF 197
+E +F
Sbjct: 142 MFHEIIF 148
>12_02_0388 -
18486957-18487016,18487286-18489418,18489985-18490484,
18490728-18490899
Length = 954
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -2
Query: 669 RIDFIKCIIVIEFTNLHRSRWLKDVTSFRARFRYKLIPETDNLVRCKITDEKIHSSRLQ- 493
R+D I CI + + + +L+D+ + ++I T N TDEK S Q
Sbjct: 771 RLDLISCISLTNISWVQHFPYLEDLIVYNCEKLQQIIGSTSNNDNLPNTDEKERISLSQP 830
Query: 492 CVAKHTYI 469
C+ + T I
Sbjct: 831 CLKRFTLI 838
>12_02_0390 - 18510095-18510148,18510318-18512450,18513018-18513681,
18514089-18514202,18514835-18514979,18515274-18515331
Length = 1055
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = -2
Query: 669 RIDFIKCIIVIEFTNLHRSRWLKDVTSFRARFRYKLIPETDNLVRCKITDEKIHSSRLQ- 493
R+D I CI + + + R +L+D+ F ++I N DEK Q
Sbjct: 874 RLDLITCISLTNISWIQRFPYLEDLIVFNCEALQQIIGSVSNSDNLPNADEKERKPLSQP 933
Query: 492 CVAKHTYITPSRLS 451
C+ + I RL+
Sbjct: 934 CLKRFALIKLKRLT 947
>08_02_1180 +
24980042-24980784,24980874-24981168,24981650-24981823,
24981999-24982187,24982290-24982403,24982517-24982837,
24983485-24983542,24984216-24984337
Length = 671
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = -3
Query: 434 CPLNGVSLLKKLHSNIFGSLCVPVNICYDQIPAIFVSHINVSSYL-RCGS*SL*QMVICC 258
CP G+ L+ ++ N P C D +P+I + +N S L RC S C
Sbjct: 469 CPSIGLPLVTRILCNF-----TPDEFCPDPVPSIVLEELNSESLLERCTDKSATSAFPCI 523
Query: 257 TCPFIITNISL 225
P + SL
Sbjct: 524 AAPVVYRPPSL 534
>06_03_1501 +
30612643-30613310,30613396-30613501,30613732-30613934,
30614211-30614502
Length = 422
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +3
Query: 81 RRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGY 185
+ + ++ ML H+ WV E +I HT + G+
Sbjct: 187 KAEKNVEMLSEHLADWVSEEDGKKIVFHTFSNTGW 221
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,302,987
Number of Sequences: 37544
Number of extensions: 434138
Number of successful extensions: 897
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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