Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10864
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15675| Best HMM Match : CP12 (HMM E-Value=1.5)                      31   0.78 
SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76)                    29   3.1  
SB_17742| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_22661| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_22660| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_16410| Best HMM Match : DUF1306 (HMM E-Value=5.7)                   28   9.6  
SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05)                   28   9.6  

>SB_15675| Best HMM Match : CP12 (HMM E-Value=1.5)
          Length = 153

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 24  INTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYG 182
           I+T+YLDTT+ +  +  FP+++++I   V    Q V   P   I    +   G
Sbjct: 20  IDTLYLDTTYCDPQY-TFPKQEETINFAVTKAAQAVSENPKTLIVCAIAKELG 71


>SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76)
          Length = 600

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 126 WVDGEPTNRIALHTSARYGYEFVFNEIYNILNMKTYVSDDK 248
           W      + ++L   ++YGYE++   I     +K +VSD++
Sbjct: 27  WFSQGAEHVVSLQCKSKYGYEYMLKSIAIYYKIKIHVSDER 67


>SB_17742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -1

Query: 763 TKSLLDLKIQNLIYIFNKT 707
           T +L  L++QNL+YIFN+T
Sbjct: 505 TDALSSLEVQNLVYIFNET 523


>SB_22661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 47  HIPE*KF*QFPTQERQHPNVGQSYKAVGRRRTYQQNS 157
           HIP   F + PT+E       + YK++ +RRT ++ S
Sbjct: 70  HIPYPYFDEIPTEEEMKKKSAEFYKSMKKRRTVRKIS 106


>SB_22660| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1179

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 47  HIPE*KF*QFPTQERQHPNVGQSYKAVGRRRTYQQNS 157
           HIP   F + PT+E       + YK++ +RRT ++ S
Sbjct: 70  HIPYPYFDEIPTEEEMKKKSAEFYKSMKKRRTVRKIS 106


>SB_16410| Best HMM Match : DUF1306 (HMM E-Value=5.7)
          Length = 396

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -1

Query: 763 TKSLLDLKIQNLIYIFNKT 707
           T +L  L++QN++YIFN+T
Sbjct: 276 TDALSSLEVQNVVYIFNET 294


>SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05)
          Length = 717

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +3

Query: 3   KDNMPIKINTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRI 155
           +DNMPI  + +        +S DN P   +++ +  N++    D  PT  +
Sbjct: 68  EDNMPISADNMLTSADNMPKSADNMPISANNMPISANNMLTSADNMPTGHL 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,482,666
Number of Sequences: 59808
Number of extensions: 554478
Number of successful extensions: 1168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)