Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10864
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   3.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.6  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +3

Query: 159 LHTSARYGYEFVFNEIYNILNMKTYVSDDKWA 254
           L++  +Y    +F  +YN  + +T+     WA
Sbjct: 100 LNSEQKYEVRMLFELLYNAKDFQTFYKTAAWA 131


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +3

Query: 159 LHTSARYGYEFVFNEIYNILNMKTYVSDDKWA 254
           L++  +Y    +F  +YN  + +T+     WA
Sbjct: 100 LNSEQKYEVRMLFELLYNAKDFQTFYKTAAWA 131


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 176 TSRCMQGYSVGRFSVYPLLYMI 111
           T+ C Q YS G F+   +++++
Sbjct: 219 TADCTQVYSTGNFTCLEVVFVL 240


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 189 FVFNEIYNILNMKTYVSDD 245
           F+F  + N LN K + +DD
Sbjct: 282 FLFRSLQNSLNGKNFNNDD 300


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,564
Number of Sequences: 438
Number of extensions: 5772
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)