Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10864
(772 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g26680.2 68416.m03336 DNA cross-link repair protein-related c... 35 0.068
At3g26680.1 68416.m03335 DNA cross-link repair protein-related c... 35 0.068
At3g19970.1 68416.m02527 expressed protein 31 0.84
At5g26120.1 68418.m03107 glycosyl hydrolase family protein 51 si... 30 1.9
At3g12160.1 68416.m01516 Ras-related GTP-binding family protein ... 28 5.9
At1g02370.1 68414.m00183 pentatricopeptide (PPR) repeat-containi... 28 5.9
At5g13940.1 68418.m01630 hypothetical protein 28 7.9
At3g11460.1 68416.m01397 pentatricopeptide (PPR) repeat-containi... 28 7.9
At2g40940.1 68415.m05055 ethylene response sensor / ethylene-res... 28 7.9
>At3g26680.2 68416.m03336 DNA cross-link repair protein-related
contains weak similarity to Swiss-Prot:P30620 DNA
cross-LINK repair protein PSO2/SNM1 [Saccharomyces
cerevisiae]
Length = 484
Score = 34.7 bits (76), Expect = 0.068
Identities = 20/73 (27%), Positives = 38/73 (52%)
Frame = +3
Query: 21 KINTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFN 200
+++ +YLDTT+ N + FP ++D + +V K ++ +P I + S G E V+
Sbjct: 277 RVHVLYLDTTYCNPRY-KFPSKEDVLSYVVRITKDFLRKQPKTLIVV-GSYSIGKECVYL 334
Query: 201 EIYNILNMKTYVS 239
I L +K + +
Sbjct: 335 AIAKALGVKIFAN 347
>At3g26680.1 68416.m03335 DNA cross-link repair protein-related
contains weak similarity to Swiss-Prot:P30620 DNA
cross-LINK repair protein PSO2/SNM1 [Saccharomyces
cerevisiae]
Length = 484
Score = 34.7 bits (76), Expect = 0.068
Identities = 20/73 (27%), Positives = 38/73 (52%)
Frame = +3
Query: 21 KINTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFN 200
+++ +YLDTT+ N + FP ++D + +V K ++ +P I + S G E V+
Sbjct: 277 RVHVLYLDTTYCNPRY-KFPSKEDVLSYVVRITKDFLRKQPKTLIVV-GSYSIGKECVYL 334
Query: 201 EIYNILNMKTYVS 239
I L +K + +
Sbjct: 335 AIAKALGVKIFAN 347
>At3g19970.1 68416.m02527 expressed protein
Length = 434
Score = 31.1 bits (67), Expect = 0.84
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 81 RRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGY 185
+ + +I LVNH+ W+D E + HT + G+
Sbjct: 210 KAEKNIESLVNHLADWLDEEQKKNLVFHTFSNTGW 244
>At5g26120.1 68418.m03107 glycosyl hydrolase family protein 51
similar to arabinoxylan arabinofuranohydrolase isoenzyme
AXAH-II from GI:13398414 [Hordeum vulgare]
Length = 674
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 200 IENKFVAITSRCMQGYSVGRFSVYPLLYMIDQHSDAV 90
+E + + S C+ + +G FSVY L ++D DA+
Sbjct: 3 METSWRFLRSVCLLSFILGSFSVYQTLCLVDAQEDAI 39
>At3g12160.1 68416.m01516 Ras-related GTP-binding family protein
similar to ras-related GTP-binding protein RGP1
SP:P25766 from [Oryza sativa];contains Pfam profile:
PF00071 Ras family
Length = 222
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 165 TSARYGYEFVFNEIYNILNMKTYVSDDKWACTANYHLLKGSR 290
T+ + + EIY I++ K+ +DD A N LLKG+R
Sbjct: 163 TNVETAFLTILTEIYRIISKKSLTADDDDA-DGNSSLLKGTR 203
>At1g02370.1 68414.m00183 pentatricopeptide (PPR) repeat-containing
protein low similarity to DNA-binding protein [Triticum
aestivum] GI:6958202; contains Pfam profile PF01535: PPR
repeat
Length = 537
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 394 ECNFFSNETPFNGQ*KLALRQPRRRYICMFRDALQPRGMN 513
E NF +N PFN + +R + + + DA++ RG++
Sbjct: 200 ELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGIS 239
>At5g13940.1 68418.m01630 hypothetical protein
Length = 395
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +3
Query: 9 NMPIKINTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARY 179
N+PI +N LDT F FPR D + + K WV + L + RY
Sbjct: 25 NLPIVVNEAKLDTKLLTRYFSKFPR--DDLPHFAD--KTWVWDRSYESLLLPSQNRY 77
>At3g11460.1 68416.m01397 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 623
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -3
Query: 344 IPAIFVSHINVSSYLRCGS 288
+P +FVS+ ++S Y RCG+
Sbjct: 289 VPNVFVSNASISMYARCGN 307
>At2g40940.1 68415.m05055 ethylene response sensor /
ethylene-responsive sensor (ERS) identical to ethylene
response sensor (ERS) [Arabidopsis thaliana] GI:1046225
Length = 613
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -2
Query: 510 HSSRLQCVAKHTYITPSRLSKGEFSLSIERCLIAEKIT-FKYFWFALCSGKHLL*SNSRH 334
H ++ + K+ YI+ + ++ FS+ +E +K F Y W + G ++ + H
Sbjct: 10 HVNQDDLLVKYQYISDALIALAYFSIPLELIYFVQKSAFFPYKWVLMQFGAFIILCGATH 69
Query: 333 F 331
F
Sbjct: 70 F 70
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,177,646
Number of Sequences: 28952
Number of extensions: 380961
Number of successful extensions: 882
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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