Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10863X
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho... 73 3e-14
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy... 28 0.97
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 27 2.2
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 3.0
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 26 3.9
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 25 5.2
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 25 5.2
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 25 6.8
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 6.8
SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|c... 25 9.0
>SPAC1F12.02c |p23fy||translationally controlled tumor protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 72.5 bits (170), Expect = 3e-14
Identities = 37/76 (48%), Positives = 49/76 (64%)
Frame = +2
Query: 245 ISSKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQ 424
I ++L+E P++V VF+ N +K IL FK+ F+ GESMD D MV +M YR+ DG
Sbjct: 95 IKARLQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDAMVVLMNYRE-DGI- 152
Query: 425 IPIMMFFKHGLEEEKF 472
P M+FFK GL EKF
Sbjct: 153 TPYMIFFKDGLVSEKF 168
Score = 66.9 bits (156), Expect = 2e-12
Identities = 38/85 (44%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 DTYKMKLVDEVIYEVTGRLVTRAQG-DIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRL 179
D Y +K VD+++YE ++VT QG D+ I G NPSAE+A+E + E+ ++V + RL
Sbjct: 16 DAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAEEGTETVNNLVYSFRL 74
Query: 180 VETYAFGDKKSYTLYLKDYMKKLVA 254
T +F DKKSY Y+K YMK + A
Sbjct: 75 SPT-SF-DKKSYMSYIKGYMKAIKA 97
>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 27.9 bits (59), Expect = 0.97
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -3
Query: 519 IKAPFGIIELFLSTI*NFSSSRPCLKNIMIGICVPSKSLYSIMATMPSQSM 367
+ A F II+ F+ T FSS CL + I +P SL++ + QSM
Sbjct: 260 VPATFTIIDSFIHTYDGFSSMTQCL----LIISLPLSSLWASSTALKLQSM 306
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +3
Query: 60 VTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGD 203
+T G Q + F PS E +E TD+ ++ V ++ V F D
Sbjct: 6 LTEVWGKPQKDIFFPSGSEVEESTDAPIQRTVQPIVTGSSVLALKFAD 53
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -1
Query: 428 VFAYHQSLYIPSWQPC-HHN 372
V A+ Q L++P W PC HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 173 VVQDYVNSALDGRVRALVSLFSRRIKTLDLDIT 75
V++D +NS LDG + + S R +T LD++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLS 373
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -2
Query: 352 ELKFLKPAEDVFHYFVHVCFKYFNLVR 272
+ FLKP ++ YF+ + +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 25.4 bits (53), Expect = 5.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 294 LNTSTWSGAFSSNLLLIF 241
+ TS WSG +S ++L+F
Sbjct: 53 IETSAWSGKLNSRIILVF 70
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 471 NFSSSRPCLKNIMIGICVPSKSLY 400
NFS+ R CL+N ++ CVP +Y
Sbjct: 795 NFSNYRDCLENCVLP-CVPFLGVY 817
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +2
Query: 218 IVPQRLYEKISSKLEEKAPDQVEVFKTNMNKVM 316
+ P++ YE++S LEE+ D E+ K +++ ++
Sbjct: 721 LTPEKFYERLSKLLEEENSDLGEL-KNHLDSII 752
>SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 186
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -3
Query: 345 SSLNLPRMSFITLFMFVLNTS 283
+SLN PR+ +T++ F+ T+
Sbjct: 77 NSLNFPRIEGLTIYKFIFKTA 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,083,572
Number of Sequences: 5004
Number of extensions: 40451
Number of successful extensions: 123
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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