Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10863X
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436... 60 8e-10
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656... 33 0.18
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 29 3.0
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374... 28 4.0
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109... 28 4.0
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534... 28 5.2
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336... 27 6.9
04_01_0011 + 207319-207605,207935-208184,208559-208729 27 9.1
>11_06_0628 -
25643006-25643123,25643314-25643471,25643559-25643687,
25644378-25644451,25644771-25644798
Length = 168
Score = 60.5 bits (140), Expect = 8e-10
Identities = 32/81 (39%), Positives = 48/81 (59%)
Frame = +2
Query: 227 QRLYEKISSKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYR 406
+R + +S+KL+ ++ E FK N+ K +LG+ K+LQFF GESM DG + Y+
Sbjct: 92 KRYIKNLSAKLDA---EKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDDGGLVFAYYK 148
Query: 407 DFDGTQIPIMMFFKHGLEEEK 469
DG P ++F HGL+E K
Sbjct: 149 --DGATDPTFLYFSHGLKEVK 167
Score = 50.8 bits (116), Expect = 6e-07
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Frame = +3
Query: 3 DTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEGTDSAVESGVDIVLNH 173
D++ + ++ +++EV G+ V + D+ I G NPSAE DEG D VDIV
Sbjct: 16 DSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEGVDDQAVKVVDIVDTF 74
Query: 174 RLVETYAFGDKKSYTLYLKDYMKKLVA 254
RL E F DKK + ++K Y+K L A
Sbjct: 75 RLQEQPPF-DKKQFVTFMKRYIKNLSA 100
>01_05_0142 -
18564697-18564792,18564824-18564928,18565606-18565678,
18566262-18567637
Length = 549
Score = 32.7 bits (71), Expect = 0.18
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = -2
Query: 400 FHHGNHAITIHGLPSKEL----KFLKPAEDVFHYFVHVCFKYFNLVRRL 266
FHH H ++ PSK+L ++L+ FH F ++C++Y + R+L
Sbjct: 245 FHHMLHLFQMYLKPSKKLVEGSQYLERGR-YFHSFANICYRYLKIGRKL 292
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +3
Query: 63 TRAQGDIQIEGFNPSAEEADEGTDSAVESGVD--IVLNHRLVETYAFGD 203
TR+ +Q++GF PSA ++ +G+ + V S + IV +L +T G+
Sbjct: 827 TRSSDKVQLKGFVPSAPKSSQGSRTYVSSAKNRFIVPKEQLQKTSTEGN 875
>09_02_0062 -
3742857-3743045,3744641-3744916,3745933-3745992,
3746554-3748102,3748183-3748418
Length = 769
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 81 IQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKK 209
+ I N S EE +E ++A VD+ LN +E +G+KK
Sbjct: 711 VSINYENASLEEVEEA-EAAARYAVDVHLNRPTLELKRYGEKK 752
>02_05_1057 +
33809982-33810366,33810436-33810687,33810727-33810926,
33811021-33811122
Length = 312
Score = 28.3 bits (60), Expect = 4.0
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +3
Query: 24 VDEVI-YEVTGRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFG 200
VDE I +E+ + G+I ++GF G D+AVE ++ V R+ E
Sbjct: 111 VDEYIEFEINVGCIGGGGGNITVDGFRGGGSGGGRGGDAAVEIEINEV---RVSEVRGIA 167
Query: 201 DKKS--YTLYLKD 233
K S Y L L D
Sbjct: 168 GKASGTYVLVLLD 180
>09_04_0741 -
19852339-19852497,19853185-19853246,19853352-19853415,
19853561-19853614,19853744-19853890,19854460-19854564,
19854651-19854794,19854987-19855093,19855613-19855712,
19855804-19855833,19856492-19856608,19856705-19856828,
19857143-19857189,19857272-19857400,19857777-19857852,
19858446-19858543,19858630-19858671,19858811-19859044
Length = 612
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 425 FAYHQSLYIPSWQPC-HHNPWTPQ*RTEVP 339
F YH +Y+ SW C H N ++ Q + +P
Sbjct: 264 FLYHGRMYVSSWHICFHSNVFSKQIKVMLP 293
>01_05_0078 +
17931998-17932062,17933320-17933416,17933506-17933601,
17933957-17933988,17935143-17935595,17935831-17935975,
17936058-17936159,17937798-17937890,17939448-17939489,
17940092-17940202,17940446-17940517,17940596-17940714,
17940981-17941044,17941133-17942782
Length = 1046
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 453 PCL-KNIMIGICVPSKSLYSIMATMPSQSMDSPV 355
PCL K+ GI P+K ++ TMPS S + +
Sbjct: 200 PCLLKDASTGITKPAKEQGKLLVTMPSSSTSTKI 233
>04_01_0011 + 207319-207605,207935-208184,208559-208729
Length = 235
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = +3
Query: 141 VESGVDIVLNHRLVETYAFGDKKS-YTLYLKDYMKKL--VANW 260
+ + +DIV NHRL F D++ Y+L+L +++++ A W
Sbjct: 59 INAALDIVDNHRLDGVLYFADEEGVYSLHLFHHLRQIRRFATW 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,988,603
Number of Sequences: 37544
Number of extensions: 245857
Number of successful extensions: 613
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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