Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10863X
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21409| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.11 
SB_5448| Best HMM Match : C1q (HMM E-Value=0.032)                      32   0.25 
SB_23587| Best HMM Match : ERp29 (HMM E-Value=1.6e-06)                 28   4.1  
SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05)                     28   4.1  
SB_19312| Best HMM Match : DEP (HMM E-Value=2.5e-09)                   27   7.1  
SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_9895| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  

>SB_21409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +3

Query: 57  LVTRAQG-DIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKD 233
           +V+  QG D  + G N SAE+A +  +    +G ++V+ +RLVE   +   K      K 
Sbjct: 39  IVSEKQGIDENLIGGNKSAEDACDDVEDGCTTGCNVVMANRLVE-IPYKTFKELLAEFKP 97

Query: 234 YMKKL 248
           Y+KK+
Sbjct: 98  YIKKV 102


>SB_5448| Best HMM Match : C1q (HMM E-Value=0.032)
          Length = 524

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 19/56 (33%), Positives = 34/56 (60%)
 Frame = -3

Query: 405 LYSIMATMPSQSMDSPVKN*SSLNLPRMSFITLFMFVLNTSTWSGAFSSNLLLIFS 238
           LYSI   +P++ M  PV    SL L +  ++++F+F    S+W+ + S+ L ++FS
Sbjct: 452 LYSIH-DVPNKDMTVPVS--VSLRLSQGQYLSVFVFTSRGSSWTLSNSTGLSVVFS 504


>SB_23587| Best HMM Match : ERp29 (HMM E-Value=1.6e-06)
          Length = 83

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 233 LYEKISSKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQF 352
           +Y KI  K++EK    ++   T + K++KD L   K+  F
Sbjct: 24  MYVKIMKKIQEKGTGYIDTEITRVKKLLKDKLTENKKKAF 63


>SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05)
          Length = 991

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 415 WYANTNHDVFQTWSRRREILNGR*E*LNNSKRRLD 519
           WYAN   ++ + W  RR  L  + E     K RL+
Sbjct: 798 WYANNKEELHKVWEARRAELRAKLEAERLEKERLE 832


>SB_19312| Best HMM Match : DEP (HMM E-Value=2.5e-09)
          Length = 678

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 239 EKISSKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQF 352
           EK+ S++EEK        +T M + +KD  G + E+ F
Sbjct: 257 EKLRSEVEEKPGRYAHYHRTLMEQQLKDFQGDWVEIAF 294


>SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 441 NIMIGICVPSKSLYSIMATMPSQSMD 364
           N+ I +CVPS S+  +   MPS+  D
Sbjct: 633 NLHIYLCVPSTSVLKLTIIMPSRQFD 658


>SB_9895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1547

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +3

Query: 81   IQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKD 233
            IQIE     A   DE      E  +     H  +ET+AFG   S +L +KD
Sbjct: 1369 IQIERDLIRATNRDEDDIFRSEEMISPTTTHVSLETFAFGSLYSISLSMKD 1419


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,043,279
Number of Sequences: 59808
Number of extensions: 280249
Number of successful extensions: 622
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)