Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10863X
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16640.1 68416.m02127 translationally controlled tumor family... 57 6e-09
At3g05540.1 68416.m00607 translationally controlled tumor family... 47 7e-06
At4g29060.1 68417.m04157 elongation factor Ts family protein sim... 33 0.088
At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR... 29 1.9
At1g76380.3 68414.m08876 DNA-binding bromodomain-containing prot... 28 3.3
At1g76380.1 68414.m08874 DNA-binding bromodomain-containing prot... 28 3.3
At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM dom... 28 4.4
At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)... 27 5.8
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 27 5.8
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 27 5.8
>At3g16640.1 68416.m02127 translationally controlled tumor family
protein similar to translationally controlled tumor
protein GB:AAD10032 from [Hevea brasiliensis]
Length = 168
Score = 57.2 bits (132), Expect = 6e-09
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Frame = +3
Query: 3 DTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEGTDSAVESGVDIVLNH 173
D++ K ++ +++EV G+ VT D+ I G NPSAEE DEG D + + VDIV
Sbjct: 16 DSFPYKEIENGILWEVEGKWVTVGAVDVNI-GANPSAEEGGEDEGVDDSTQKVVDIVDTF 74
Query: 174 RLVETYAFGDKKSYTLYLKDYMKKL 248
RL E + DKK + Y+K Y+K L
Sbjct: 75 RLQEQPTY-DKKGFIAYIKKYIKLL 98
Score = 46.4 bits (105), Expect = 1e-05
Identities = 27/75 (36%), Positives = 40/75 (53%)
Frame = +2
Query: 245 ISSKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQ 424
++ KL E+ DQ VFK + K +L R + QFF GE M D + Y+ +G+
Sbjct: 98 LTPKLSEE--DQA-VFKKGIEGATKFLLPRLSDFQFFVGEGMHDDSTLVFAYYK--EGST 152
Query: 425 IPIMMFFKHGLEEEK 469
P ++F HGL+E K
Sbjct: 153 NPTFLYFAHGLKEVK 167
>At3g05540.1 68416.m00607 translationally controlled tumor family
protein similar to translationally controlled tumor
protein GB:AAD10032 from [Hevea brasiliensis]
Length = 156
Score = 47.2 bits (107), Expect = 7e-06
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Frame = +3
Query: 84 QIEGFNPSAEEA--DEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKL 248
++EG NPS EE DEG D VDI+ RL E +F DKK + +++K Y+K+L
Sbjct: 30 EVEGKNPSGEEGGEDEGVDDQAVKVVDIIDTFRLQEQPSF-DKKQFVMFMKRYIKQL 85
Score = 45.2 bits (102), Expect = 3e-05
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = +2
Query: 227 QRLYEKISSKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDC-DGMVAMMEY 403
+R +++S KL+ + E+FK ++ K ++ + K+ QFF GESM+ +G + Y
Sbjct: 79 KRYIKQLSPKLDS---ENQELFKKHIESATKFLMSKLKDFQFFVGESMEGEEGSLVFAYY 135
Query: 404 RDFDGTQIPIMMFFKHGLEEEK 469
R +G P ++ +GL+E K
Sbjct: 136 R--EGATDPTFLYLAYGLKEIK 155
>At4g29060.1 68417.m04157 elongation factor Ts family protein
similar to SP|P35019 Elongation factor Ts (EF-Ts)
{Galdieria sulphuraria}; contains Pfam profiles PF00627:
UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
S1 RNA binding domain
Length = 953
Score = 33.5 bits (73), Expect = 0.088
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +3
Query: 12 KMKLVDEVIYEVT--GRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESG 152
K +++D V+ +T G +T +G+ EGF P+AEEAD+G S + G
Sbjct: 247 KGQMLDGVVKNLTRSGAFITIGEGE---EGFLPTAEEADDGIGSMMMGG 292
>At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1355
Score = 29.1 bits (62), Expect = 1.9
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +2
Query: 203 QEIL-HIVPQRLYEKISSKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ-FFTGESMD 373
+E+L H+ ++ K+ KL P +EVFK+N N + ++ F ++ FF GE D
Sbjct: 217 EEMLSHMKSDKMEVKLL-KLNHPPPQIMEVFKSNYNALNENEKSMFLDIACFFRGEKAD 274
>At1g76380.3 68414.m08876 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +3
Query: 75 GDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKK 245
GD+ + N + + T DI+L LVE+ DKK L KK
Sbjct: 103 GDLDSDARNRRKIDGSDNTGEKASKATDILLQRSLVESTPLPDKKLLFFILDRVQKK 159
>At1g76380.1 68414.m08874 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +3
Query: 75 GDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKK 245
GD+ + N + + T DI+L LVE+ DKK L KK
Sbjct: 103 GDLDSDARNRRKIDGSDNTGEKASKATDILLQRSLVESTPLPDKKLLFFILDRVQKK 159
>At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM
domain-containing protein low similarity to GLUT4
vesicle protein [Rattus norvegicus] GI:4193489; contains
Pfam profiles PF00168: C2 domain, PF02893: GRAM domain
Length = 594
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 425 FAYHQSLYIPSWQPC-HHNPWTPQ*RTEVP 339
F YH +Y+ +W C H N ++ Q + VP
Sbjct: 255 FLYHGRMYVSAWHICFHSNVFSKQMKVVVP 284
>At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)
family protein similar to SP|P41972 Isoleucyl-tRNA
synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase)
(IleRS) {Staphylococcus aureus}; contains Pfam profile
PF00133: tRNA synthetases class I (I, L, M and V)
Length = 1093
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 302 MNKVMKDILGRFKELQFFTGE---SMDCDGM 385
+NK++KDI+ R+K LQ + + DC G+
Sbjct: 167 LNKILKDIINRYKLLQNYKVQYVPGWDCHGL 197
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 96 FNPSAEEADEG--TDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMK 242
F PS E + G + S +E+ + + L R+ E FGD+ T D+M+
Sbjct: 546 FAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGASNDFMQ 596
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 96 FNPSAEEADEG--TDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMK 242
F PS E + G + S +E+ + + L R+ E FGD+ T D+M+
Sbjct: 558 FAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGASNDFMQ 608
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,704,086
Number of Sequences: 28952
Number of extensions: 204842
Number of successful extensions: 616
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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