Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10861
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    29   0.36 
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    29   0.48 
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    27   2.5  
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    26   3.4  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    26   4.4  

>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 427 HNPVLRLHYLNLSREFRSLARGGGDL--RNRFTLSMVSSLVSEVRN 296
           HNP   L  L +SRE  SL     D   + R TL  +S+LVS  +N
Sbjct: 255 HNPSTLLSILPISRELNSLLNRIFDRNPKTRITLPELSTLVSNCKN 300


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
 Frame = +3

Query: 87  PTEDYPKIVRSEFDASPDGAYNYNFETSNGIVRTNTGELKEALDDDNKPHVIVAVREATV 266
           P ED P +  S+    P  A     ++S+ + + N   ++  L  + +    +   E + 
Sbjct: 612 PFEDAPALDESDLSGDPFWAIQPK-QSSSQVPKENHHNIQSKLSINTEAATDLKANELSS 670

Query: 267 TRTLTANLKPLRT-SLTRLDTMLRVNLFLRSPPPRAKLLNS 386
            +T        R+ SL+ L   LR +  +R  PP +K++NS
Sbjct: 671 PKTPEYCRGDDRSISLSPLSYRLRKSKHIRESPPSSKVINS 711


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 476 SIKLITSNKRMWWIFATQSC 417
           S+  +T+N  +WW++A   C
Sbjct: 390 SLTTVTTNTNIWWVWAESRC 409


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 144 AYNYNFETSNGIVRTNTGELKEALDDDNKPHVIVAVREA 260
           A    F+  NG+ +T    + EAL   +K H +VA R+A
Sbjct: 65  AMKITFDLINGVYKTVPDRVPEALVSTSKKH-LVAARDA 102


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 231 PHVIVAVREATVTRTLTANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSL 389
           P  I  +    +  TLTA+L+      T L+T L+  +    PP    L++S+
Sbjct: 125 PDSIEGIPGCHIIYTLTASLERATQPPTNLETALQFRVIRTIPPNSLDLMHSV 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,126,530
Number of Sequences: 5004
Number of extensions: 39080
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)