Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10861
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0406 + 24978845-24978970,24979073-24979142,24979541-249795...    30   1.5  
04_04_0702 + 27383876-27384862                                         28   4.5  
09_02_0454 + 9514706-9515776                                           28   6.0  
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543...    27   7.9  

>04_04_0406 +
           24978845-24978970,24979073-24979142,24979541-24979556,
           24979813-24979930,24980015-24980137,24980249-24980408,
           24980470-24980546,24980635-24980687,24981263-24981317,
           24981664-24981858
          Length = 330

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -2

Query: 296 WFQVCRQCSCNCSFTHSNNNVRLVVVVESLLQLTSVRTHDAVGSLEIVVV 147
           W  +  Q   +    H NN V L V+ ESLLQ    R   +  ++ +++V
Sbjct: 248 WDVLANQAVVDFVRLHLNNGVELSVICESLLQEAITRDPPSTDNMSVILV 297


>04_04_0702 + 27383876-27384862
          Length = 328

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 186 TNTGELKEALDDDNKPHVIVAVREATVTRTLTANLKPLRTSLTRLDT 326
           TN  + + + D D+   VI  V +A  T   T+N   L +SLT  DT
Sbjct: 223 TNKRKRQPSEDPDDGVEVIGVVSKAVKTEAPTSNSSSLSSSLTSRDT 269


>09_02_0454 + 9514706-9515776
          Length = 356

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -2

Query: 179 DAVGSLEIVVVSSIGAGVEFRPNDLRVVLCRGGS 78
           D VGS  +V V      V     D R VLCRGG+
Sbjct: 187 DHVGSTAVVAVVEESRVVVANCGDSRAVLCRGGA 220


>01_02_0116 - 11252220-11253313,11253398-11253559,11253977-11254306,
            11254328-11254377,11255195-11255389,11255532-11255625,
            11255713-11255961,11256831-11256892,11257434-11257534,
            11257766-11257880,11258384-11258475,11259197-11259333,
            11259721-11259760
          Length = 906

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +3

Query: 159  FETSNGIVRTNTGELKEALDDDNKPHV----IVAVREATVTRTLTANLKPLRTSLTRLDT 326
            + ++   +RT   +LKEA + + +P +     V V E  V + L   LK L  ++ R   
Sbjct: 798  YRSAQSRIRTYISQLKEAAERERRPLMEGGKQVVVDEQKVEKFLYTMLK-LNATILRHSR 856

Query: 327  MLRVNLFLRSPPP 365
            M  V L    PPP
Sbjct: 857  MAVVVLVSLPPPP 869


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,330,613
Number of Sequences: 37544
Number of extensions: 284010
Number of successful extensions: 771
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)