Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10861
(567 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53343| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.66
SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0) 30 1.5
SB_28910| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0) 29 2.6
SB_26806| Best HMM Match : Annexin (HMM E-Value=0) 29 3.5
SB_33756| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0035) 28 6.1
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14) 28 6.1
SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8) 28 6.1
SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_34041| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
>SB_53343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 779
Score = 31.1 bits (67), Expect = 0.66
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +3
Query: 105 KIVRSEFDASPDGAYNYNFETSNGIVRTNTGELKEALDDDNKPHVIVAVREATVTRT--L 278
++ +SE +SP +Y+ F+++N + + K++ +NK V E+ T +
Sbjct: 148 RVTKSESLSSPSNSYSQAFKSNNSREEESL-DPKKSSGTENKSFETVKGSESRSKETPAV 206
Query: 279 TANLKPLRTSL 311
TAN+K LRT +
Sbjct: 207 TANIKELRTQI 217
>SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0)
Length = 488
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +3
Query: 117 SEFDASPDGAYNYNFETSNGIVRTNTGE 200
+E DA PDG+YN++ ++ +V T TGE
Sbjct: 218 TEEDAKPDGSYNFDHKS---VVNTETGE 242
>SB_28910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 84 PPTEDYPKIVRSEFDASPDGAY 149
PPT+DY + RS+ D S DG Y
Sbjct: 17 PPTKDYDRRSRSQDDDSDDGCY 38
>SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1182
Score = 29.1 bits (62), Expect = 2.6
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Frame = -2
Query: 293 FQVCRQCSCNCSFTHSNN-NVRLVVVVESLLQLTSVRTHDAVG-SLEIVVVSSIGAGVEF 120
F +CR C C + H+++ N + V V+ H+ VG + E V G +
Sbjct: 324 FPLCRPCRC---YGHASSCNPKTGVCVDC--------QHNTVGKNCEACAVGFYGIATKG 372
Query: 119 RPNDLRVVLCRGGSDDGSHKGESYND 42
PND + C GGS Y D
Sbjct: 373 TPNDCKRCQCPGGSSGNKFSESCYVD 398
>SB_26806| Best HMM Match : Annexin (HMM E-Value=0)
Length = 829
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = -2
Query: 230 LVVVVESLLQLTSVRTHDAVGSLEIVVVSSIGAGVEFRPNDLRVVLCRGGSDDGSHKGES 51
LV ++S Q+T+ + H A+ + + + V+ + AG + R+ L R S G + ES
Sbjct: 274 LVKAIQSPTQMTADKLHSALQNKDTLTVARMIAGADPTARFFRMRLARDTSATGVVECES 333
Query: 50 YND 42
+D
Sbjct: 334 ADD 336
>SB_33756| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0035)
Length = 351
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -2
Query: 284 CRQC-SCNCSFTHSNNNVRLVVVVESLLQLT 195
C C CNC+ +NNNV+L + L++++
Sbjct: 317 CVDCLCCNCANPFNNNNVKLTENTKQLMEIS 347
>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
Length = 1197
Score = 27.9 bits (59), Expect = 6.1
Identities = 25/96 (26%), Positives = 40/96 (41%)
Frame = +3
Query: 102 PKIVRSEFDASPDGAYNYNFETSNGIVRTNTGELKEALDDDNKPHVIVAVREATVTRTLT 281
PKI P N N + S RT G+ +++ ++A + RT
Sbjct: 840 PKIGMDALQVYPISQANAN-QRSGRAGRTGPGQCFRLYTENSYNSELLATTIPEIQRTNL 898
Query: 282 ANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSL 389
AN+ L SL + +L + PPP+ +LNS+
Sbjct: 899 ANVVLLLKSLG-VQNLLEFHFM--DPPPQENILNSM 931
>SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8)
Length = 627
Score = 27.9 bits (59), Expect = 6.1
Identities = 22/58 (37%), Positives = 30/58 (51%)
Frame = +3
Query: 222 DNKPHVIVAVREATVTRTLTANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 395
D P V+ R T+ R T L L ++TRLDT+LRV L + P L++L R
Sbjct: 135 DTLPRVVT--RLDTLPRVGT-RLDTLPRAVTRLDTLLRVGTRLDTLPRVVTRLDTLPR 189
>SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 120 EFDASPDGAYNYNFETSNGIVRTNTGELKEALDDDNKPHVIVAVRE 257
E D+ YNY+ NG+ + G+L DN HV+ A E
Sbjct: 65 EPDSEQADGYNYDTSHHNGVATSQRGQLARLAMGDNN-HVLNACEE 109
>SB_34041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 951
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 156 NFETSNGIVRTNTGELKEALDD 221
N +TSNG TN+G L E ++D
Sbjct: 759 NEKTSNGTSNTNSGSLSEKIED 780
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,318,756
Number of Sequences: 59808
Number of extensions: 315576
Number of successful extensions: 1092
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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