Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10861
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    33   0.002
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   0.93 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   3.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   6.5  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 33.5 bits (73), Expect = 0.002
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 269 TNTDGKPETITYFADETGYHAQGESIP 349
           T  DG+  +ITY ADE G+  QG  IP
Sbjct: 78  TAPDGQQVSITYVADENGFQVQGSHIP 104



 Score = 32.3 bits (70), Expect = 0.003
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +3

Query: 108 IVRSEFDASPDGAYNYNFETSNGIVRTNTGELKEALDDDNKPHVI 242
           I   + + + DG Y  NFETSNGI    +G+ K+    DN+  V+
Sbjct: 29  ITSQQLEVNFDGNYINNFETSNGISHQESGQPKQV---DNETPVV 70


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 165 TSNGIVRTNTGELKEAL 215
           TS G  R +TGE+KEA+
Sbjct: 403 TSKGEYRMSTGEMKEAI 419


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 282 ANLKPLRTSLTRLDTMLRVNLFLRS 356
           A ++P   + T    ++RVNLF+RS
Sbjct: 45  ARIRPSGENATDGPAIVRVNLFVRS 69


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 282 ANLKPLRTSLTRLDTMLRVNLFLRS 356
           A ++P   + T    ++RVN+F+RS
Sbjct: 45  ARIRPSGENATDGPAVVRVNIFVRS 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,493
Number of Sequences: 438
Number of extensions: 2884
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)