Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10861
         (567 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39930.1 68418.m04842 expressed protein ; expression supporte...    29   1.6  
At4g22730.1 68417.m03279 leucine-rich repeat transmembrane prote...    29   1.6  
At3g11070.1 68416.m01337 outer membrane OMP85 family protein con...    29   2.9  
At5g41315.1 68418.m05021 basic helix-loop-helix (bHLH) family pr...    28   5.0  
At4g24290.2 68417.m03488 expressed protein                             27   6.6  
At4g24290.1 68417.m03487 expressed protein                             27   6.6  
At4g09680.1 68417.m01590 expressed protein                             27   8.7  
At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein / ...    27   8.7  
At1g36180.1 68414.m04497 acetyl-CoA carboxylase 2 (ACC2) nearly ...    27   8.7  

>At5g39930.1 68418.m04842 expressed protein ; expression supported
           by MPSS
          Length = 423

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
 Frame = +3

Query: 93  EDYPKIVRSEFDASPDG-AYNYNFETSNGIVRTNTGELKEALDDDNKPHVIVAVREATVT 269
           E+  + ++ EF A+ +  A     +T   IVR     L  A+   N   VIV  +E  + 
Sbjct: 204 EELARELKEEFSANAESRASGMVIDTMGFIVREGYALLLHAIRTFNASLVIVVGQEEKLV 263

Query: 270 RTLTANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNS 386
             L  NLK  + +L  L+      +F RS   R  L NS
Sbjct: 264 YDLKKNLK-FKKNLQVLNLEKSEGVFSRSSDFRKTLRNS 301


>At4g22730.1 68417.m03279 leucine-rich repeat transmembrane protein
           kinase, putative leucine rich repeat receptor-like
           kinase, Oryza sativa, PATCHX:E267533
          Length = 688

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 306 SLTRLDTM-LRVNLFLRSPPPRAKLLNSLDRFK**SLNTGLCGEDPP 443
           ++ +LDT+ LR N      PP  K LN   +F+    NTGLCG D P
Sbjct: 210 NIPQLDTLDLRNNTLSGFVPPGLKKLNGSFQFE---NNTGLCGIDFP 253


>At3g11070.1 68416.m01337 outer membrane OMP85 family protein
           contains Pfam profile PF01103: outer membrane protein,
           OMP85 family
          Length = 520

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +3

Query: 216 DDDNKPHVIVA----VREATVTRTLTANLKPLRTSLTRLDTMLRVNLFLRSPPP 365
           ++  K H+I A    VREAT  + L    +   ++L  LD    VN+ L S PP
Sbjct: 87  NEKTKDHIIEAEVDAVREATTLQELLEASRVANSNLRALDIFDSVNITLDSGPP 140


>At5g41315.1 68418.m05021 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain ;annotation temporarily based on
           supporting cDNA gi|17224394|gb|AF246291.1|AF246291
          Length = 637

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/36 (33%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
 Frame = -2

Query: 524 ENTTNIKKNVQKNMAVSIKLITSNKRMWW-IFATQS 420
           +N T + +N++K++AVS++ I  +  ++W + A+QS
Sbjct: 5   QNRTTVPENLKKHLAVSVRNIQWSYGIFWSVSASQS 40


>At4g24290.2 68417.m03488 expressed protein
          Length = 606

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 155 VVVSSIGAGVEFRPNDLRVVLCRGGSDD 72
           V + SIG G +    DLR+  C+GGS D
Sbjct: 13  VAIGSIGCGYDLAI-DLRLKYCKGGSKD 39


>At4g24290.1 68417.m03487 expressed protein
          Length = 350

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 155 VVVSSIGAGVEFRPNDLRVVLCRGGSDD 72
           V + SIG G +    DLR+  C+GGS D
Sbjct: 13  VAIGSIGCGYDLAI-DLRLKYCKGGSKD 39


>At4g09680.1 68417.m01590 expressed protein
          Length = 1075

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/69 (17%), Positives = 32/69 (46%)
 Frame = -2

Query: 365 WRRRPEE*IHPEHGIQSRQRST*WFQVCRQCSCNCSFTHSNNNVRLVVVVESLLQLTSVR 186
           W    ++ ++  H I++      + + C   SC C+    + N++LV+ + S +    V 
Sbjct: 325 WLLLTDQILNRSHSIRTGSLGGIFTEFCMHESCGCNSEARDCNLKLVMPISSFVHHVKVM 384

Query: 185 THDAVGSLE 159
            ++ +  ++
Sbjct: 385 LNELLSQIK 393


>At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein /
           carbohydrate-binding domain-containing protein  ;
           contains Pfam profiles PF00331: Glycosyl hydrolase
           family 10, PF02018: Carbohydrate binding domain
          Length = 752

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/20 (70%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +3

Query: 333 RVNLFLRSPPPRAK-LLNSL 389
           RV L+L  PPPRA  LLNSL
Sbjct: 154 RVILYLEGPPPRADILLNSL 173


>At1g36180.1 68414.m04497 acetyl-CoA carboxylase 2 (ACC2) nearly
           identical to acetyl-CoA carboxylase 2 (ACC2)
           [Arabidopsis thaliana] GI:11869928
          Length = 1755

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
 Frame = +3

Query: 126 DASPDGAYNYNFETSNGIVRTNTGELKEA---LDDDNKPHVIVAVREATVTRTL 278
           D    G+  Y    SN  V      L++    +  D K HVI A  EAT TR L
Sbjct: 111 DVVRGGSGTYRLRMSNSEVVAEIHTLRDGGLLMQLDGKSHVIYAKEEATGTRLL 164


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,297,100
Number of Sequences: 28952
Number of extensions: 216410
Number of successful extensions: 667
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)