Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10859X
         (450 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   5.4  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    20   9.4  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    20   9.4  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    20   9.4  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -1

Query: 129 HQYHHAAEPLVTVRVAASLVFGSIRRSPPLE 37
           H +HH    L  V  AA+   GS+    P E
Sbjct: 133 HVHHHQTSLLGKVEGAATHHLGSVYSRHPYE 163


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 301 GLPQSAVPALKYATHLPSPVPRSSVGAGRCRL 396
           GL   +   ++  TH+ SP+    V   R RL
Sbjct: 76  GLYTKSANTIRSFTHVESPIDEKFVHPHRFRL 107


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 99  VTVRVAASLVFGSIRRSPPLEVDLPASSKR 10
           V  R  A   FG ++ SPP E  +  SS R
Sbjct: 44  VCERFLAPKGFGGVQISPPNENLVVTSSNR 73


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 322 PALKYATHL 348
           PAL+Y THL
Sbjct: 50  PALQYCTHL 58


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,347
Number of Sequences: 336
Number of extensions: 1397
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)