Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10859X
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0363 + 17225472-17226778,17226910-17226917,17227313-172274... 28 4.0
04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903 28 4.0
10_01_0063 - 827069-827089,827444-829384,830582-830593 27 5.3
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75... 27 5.3
12_02_0436 - 19076486-19076609,19076860-19076944,19077321-190774... 27 7.0
04_04_0339 - 24513699-24516827 27 7.0
03_02_0586 + 9665148-9665867 27 7.0
09_02_0338 + 7426999-7428322,7428390-7428646 27 9.2
07_03_1355 - 25976951-25977289,25977413-25977721 27 9.2
07_03_0354 - 17109041-17109289,17109423-17109555,17110560-171107... 27 9.2
03_04_0103 + 17291663-17292493 27 9.2
02_02_0731 + 13470863-13471111,13471122-13471598 27 9.2
>07_03_0363 +
17225472-17226778,17226910-17226917,17227313-17227488,
17227822-17227882,17227955-17228053,17228155-17228249,
17228411-17228482,17228668-17228735,17228934-17229390,
17229486-17229596
Length = 817
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 27 VGQLREEVTVESNQILTTQRREPSQVARQRDGTGAEGASQSS 152
+G ++ + S +REP +R RDG G++G S++S
Sbjct: 403 LGSVQRKRMARSRGGSQASQREPRFRSRMRDGEGSQGKSEAS 444
>04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903
Length = 405
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 87 REPSQVARQRDGTGAEGASQSS 152
R+P + R+RDG G++G S SS
Sbjct: 128 RQPHRSRRERDGNGSDGKSGSS 149
>10_01_0063 - 827069-827089,827444-829384,830582-830593
Length = 657
Score = 27.5 bits (58), Expect = 5.3
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = -3
Query: 319 QRIGEVRRMWKRCWRRTCTSPGTS 248
+++ + R+ +RCW+ CT+ G S
Sbjct: 627 KQVAQHLRIIRRCWKNNCTADGAS 650
>02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-751889,
752025-753905,754093-754296,754807-754899,755036-755122,
755241-755328,755533-755645,755943-757259,757398-758672,
759166-759273
Length = 2233
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 2 RKHRFDDAGRSTSRGGDRRIEPNTNDAATRTVTSGSA 112
+ HR ++AG + S G RR+ P ++++ + S SA
Sbjct: 1674 KAHRSEEAGSTGSSSGGRRLPPPAPSSSSKKLRSLSA 1710
>12_02_0436 -
19076486-19076609,19076860-19076944,19077321-19077486,
19078213-19078889,19079372-19079475,19079582-19079817
Length = 463
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 316 RIGEVRRMWKRCWRRTCTSP 257
R+G+ W R +RR CTSP
Sbjct: 192 RLGDFGYSWSRRFRRRCTSP 211
>04_04_0339 - 24513699-24516827
Length = 1042
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -2
Query: 176 GC*HAHFSTALTGTFCTSTITLPSHL*RFASLR 78
G H F LT T CT+ T P L F SLR
Sbjct: 983 GMQHLSFLRTLTITECTNLETFPEWLKNFTSLR 1015
>03_02_0586 + 9665148-9665867
Length = 239
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Frame = +1
Query: 244 VGSYLETCXXXXXXXXXXXGLPQSAVPALKYATHLPSPVPRS--SVGAGR 387
VG+ + TC PQ A P + +PS PRS +G GR
Sbjct: 174 VGAVVRTCPCMEIVGPGSKKDPQLACPCMDIGARMPSKKPRSVGVIGDGR 223
>09_02_0338 + 7426999-7428322,7428390-7428646
Length = 526
Score = 26.6 bits (56), Expect = 9.2
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -1
Query: 153 HCSDWHLLHQYHHAAEP 103
H S WHLLH H +P
Sbjct: 212 HASPWHLLHLLHTRLQP 228
>07_03_1355 - 25976951-25977289,25977413-25977721
Length = 215
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Frame = -1
Query: 405 RRKEPTPPGADGGAG--YGT 352
RR+ PTP GADGG YGT
Sbjct: 153 RREGPTPGGADGGEPRYYGT 172
>07_03_0354 -
17109041-17109289,17109423-17109555,17110560-17110738,
17111568-17111689,17111813-17111960
Length = 276
Score = 26.6 bits (56), Expect = 9.2
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -1
Query: 393 PTPPGADGGAGYG 355
P PPG GG GYG
Sbjct: 46 PLPPGGGGGCGYG 58
>03_04_0103 + 17291663-17292493
Length = 276
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 48 VTVESNQILTTQRREPSQVARQRDGTGAEGASQ 146
VT++ + L R S +A + GTG+ GASQ
Sbjct: 142 VTIDRSNTLNHMIRSSSSLADRPAGTGSPGASQ 174
>02_02_0731 + 13470863-13471111,13471122-13471598
Length = 241
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 322 EQRIGEVRRMWKRCWRRTCTSPG 254
E+ +G V R W+R W RT + G
Sbjct: 158 EEGVGAVGRRWRRLWGRTERASG 180
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,636,934
Number of Sequences: 37544
Number of extensions: 216996
Number of successful extensions: 872
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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