Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10859X
         (450 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30855| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)               27   7.2  
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_30855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 29  RSTSRGGDRRIEPNTNDAATRTVTSGSAA*WYWCR 133
           R +S+    RI+  +     R V SG+ A WYW R
Sbjct: 24  RFSSKRAGVRIQVRSTSDFFRGVKSGAVAQWYWLR 58


>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
          Length = 1366

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -2

Query: 398 KSRHRPAPTEERGTGLGRCVAYFNAGTAD-WGSPADVEAVLEEDVHVSRYEPT 243
           KS+ R    E+  + + + +   N  T D  G+P ++++ ++ED   S  EPT
Sbjct: 301 KSKKRKKEVEDENSSVKKKLKSENLMTQDDTGTPEELQSGIDEDEEDSHNEPT 353


>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6119

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 380  APTEERGTGLGRCVAYFNAGTADWGSPADVEAVLEE 273
            +P E++  GL  CV    AGTAD  +   VE ++ +
Sbjct: 4823 SPVEKKDEGLYMCVISNKAGTADCEALLTVEPMVSD 4858


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,623,816
Number of Sequences: 59808
Number of extensions: 208816
Number of successful extensions: 1075
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)