Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10859X
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41019-2|AAA82328.1|  518|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AF040643-3|AAB94959.1|  128|Caenorhabditis elegans Hypothetical ...    27   6.3  
AF000196-9|AAO61448.1|  395|Caenorhabditis elegans Hypothetical ...    27   8.3  
AF000196-8|AAL11096.1|  624|Caenorhabditis elegans Hypothetical ...    27   8.3  
AF000196-7|AAC24251.2|  706|Caenorhabditis elegans Hypothetical ...    27   8.3  

>U41019-2|AAA82328.1|  518|Caenorhabditis elegans Hypothetical
           protein C04E7.3 protein.
          Length = 518

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 3   ESTALTMPVGQLREEVTVESNQILTTQRR 89
           +S  LT+P+G L E+  V+  + LT +RR
Sbjct: 225 KSKILTVPIGSLSEDQAVKQLKELTKERR 253


>AF040643-3|AAB94959.1|  128|Caenorhabditis elegans Hypothetical
           protein F14D2.5 protein.
          Length = 128

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 408 LRRKEPTPPGADGGAGYGT 352
           L ++EP   G DGG+G GT
Sbjct: 109 LHKREPRDDGGDGGSGSGT 127


>AF000196-9|AAO61448.1|  395|Caenorhabditis elegans Hypothetical
           protein B0041.2c protein.
          Length = 395

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 435 TARND*S*GLRRKEPTPPGADGGAGYGTRKVRG 337
           T+ N  +  L  +   PPG+DGGAG  T +  G
Sbjct: 335 TSANTSTNHLNHRGGPPPGSDGGAGPSTSRSGG 367


>AF000196-8|AAL11096.1|  624|Caenorhabditis elegans Hypothetical
           protein B0041.2b protein.
          Length = 624

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 435 TARND*S*GLRRKEPTPPGADGGAGYGTRKVRG 337
           T+ N  +  L  +   PPG+DGGAG  T +  G
Sbjct: 564 TSANTSTNHLNHRGGPPPGSDGGAGPSTSRSGG 596


>AF000196-7|AAC24251.2|  706|Caenorhabditis elegans Hypothetical
           protein B0041.2a protein.
          Length = 706

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 435 TARND*S*GLRRKEPTPPGADGGAGYGTRKVRG 337
           T+ N  +  L  +   PPG+DGGAG  T +  G
Sbjct: 646 TSANTSTNHLNHRGGPPPGSDGGAGPSTSRSGG 678


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,951,756
Number of Sequences: 27780
Number of extensions: 155232
Number of successful extensions: 512
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)