Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10859X
         (450 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19600.1 68416.m02485 NLI interacting factor (NIF) family pro...    27   4.4  
At5g32410.2 68418.m03816 hypothetical protein                          27   7.7  
At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit...    27   7.7  

>At3g19600.1 68416.m02485 NLI interacting factor (NIF) family
           protein low similarity to CTD phosphatase [Xenopus
           laevis] GI:13487713; contains Pfam profile PF03031: NLI
           interacting factor
          Length = 601

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 53  RRIEPNTNDAATRTVTSGSAA*WYWC 130
           R+IEP  N++++   +S S   WY C
Sbjct: 310 RKIEPTINESSSSLSSSSSCGHWYIC 335


>At5g32410.2 68418.m03816 hypothetical protein
          Length = 123

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 153 HCSDWHLLHQYHHAAEPLVTVRVAASLVFGSIRRSPPLE 37
           H + W    ++HH + PL T+     L   +  RSPPL+
Sbjct: 30  HSTPWSS-RRHHHFSPPLDTLVEYHHLYHSTFTRSPPLD 67


>At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit,
           putative Strong similarity to gb|Y18349 U2 snRNP
           auxiliary factor, small subunit from Oryza sativa. ESTs
           gb|AA586295 and gb|AA597332 come from this gene
          Length = 296

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 423 D*S*GLRRKEPTPPGADGGAGYGTRKVRGVLQRWN 319
           D S G R+  P   G+ GG   G+ + R  +++WN
Sbjct: 251 DGSRGRRQASPKRGGSPGGGREGSEERRARIEQWN 285


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,430,343
Number of Sequences: 28952
Number of extensions: 141468
Number of successful extensions: 428
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)