Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10857
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,181...    29   3.1  
10_01_0252 + 2646074-2646430,2646476-2648158                           29   4.1  
01_06_0851 + 32455364-32458050,32458883-32458922                       29   4.1  
04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784     28   7.1  
02_02_0363 + 9446055-9446524,9446658-9446771,9446856-9447281,944...    28   7.1  

>11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,
            1816199-1816309,1816934-1817074,1817153-1817323,
            1817421-1817625,1817714-1817886,1817997-1818079,
            1818487-1818626,1818806-1818891,1818957-1819142,
            1819172-1819365,1820387-1820736,1821153-1821235
          Length = 1187

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +1

Query: 181  VAVSNGGRRKNAKLRTRRLRPVFTLTDP 264
            V +S GGR  N   R RRLRPV  L +P
Sbjct: 972  VTLSRGGRASNLS-RGRRLRPVLLLDEP 998


>10_01_0252 + 2646074-2646430,2646476-2648158
          Length = 679

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 392 QTLTSIRSRKEIVAFLDKDSGCESYFHW*CFIGLLFLC 279
           +TL  I    +I+A ++   GC S+ H  C +    LC
Sbjct: 520 ETLEDIDLAHKIIAKMESSEGCPSFIHNACVLSKALLC 557


>01_06_0851 + 32455364-32458050,32458883-32458922
          Length = 908

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 3   GVESDCSGHRIWSKDPAKSYHPIRSSISSAEAAG-EPWIP 119
           G  +D  G R+WS D    Y P  +S+ SA AAG +P +P
Sbjct: 58  GKGNDTDG-RVWSGDAGSKYAP--ASLGSASAAGQDPSVP 94


>04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784
          Length = 1035

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 32/92 (34%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
 Frame = +2

Query: 443 NLFVPLY*PRKA*NKYLSTFRFKIINYLETFFGDDIR*KILSEFSVITR*NNYYH*NKLA 622
           N  +PLY P K  NK L TFR +    L T   D ++  +   F      N  Y      
Sbjct: 150 NFGLPLYQPYKG-NKILWTFRGRF--RLSTRIQDKVQ--VADVFLAAEFHNKIY-----G 199

Query: 623 REFGDLL---TLLCEEAAYIKSKI*IGCSQLH 709
            EF D      +LCEEAA I S    G ++LH
Sbjct: 200 MEFQDQSHWWDILCEEAAEIASNTCSGVAKLH 231


>02_02_0363 +
           9446055-9446524,9446658-9446771,9446856-9447281,
           9447812-9447893,9447964-9448020,9448633-9448881,
           9448978-9449109,9449163-9449291
          Length = 552

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = +2

Query: 47  PSQELSPNTELHIQCRGSRRALDTRPLLNQRSKK*RRKVLPSPRPWRFPTGVGGKMLNSG 226
           PS  LSP + +H  C     A+     L + + + R +V  SP  WR P G+ G   +SG
Sbjct: 473 PSSSLSPGSGIHAGC-----AIRVELKLLRFNGELRGEVWLSPFLWRRPKGINGS--SSG 525

Query: 227 L 229
           L
Sbjct: 526 L 526


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,405,292
Number of Sequences: 37544
Number of extensions: 485527
Number of successful extensions: 1060
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)