Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10857
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    33   0.30 
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    33   0.30 
U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t prot...    30   2.1  

>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 20  QWPPYLEQGPSQELSPNTELHIQCRGSRRALDTRPLLNQRS-KK*RRKVLPSPRP 181
           Q+PP  +Q P Q +S +  +    RGS   +  R  L+ +S    RR+V P P+P
Sbjct: 544 QYPPRYDQVPDQSISNHYIIPKSMRGSSSPILVRVQLSSKSPDSVRRQVQPQPQP 598


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 20  QWPPYLEQGPSQELSPNTELHIQCRGSRRALDTRPLLNQRS-KK*RRKVLPSPRP 181
           Q+PP  +Q P Q +S +  +    RGS   +  R  L+ +S    RR+V P P+P
Sbjct: 766 QYPPRYDQVPDQSISNHYIIPKSMRGSSSPILVRVQLSSKSPDSVRRQVQPQPQP 820


>U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t protein
           3, isoform a protein.
          Length = 350

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 407 NYLLPQTLTSIRSRKEIVAFLDKDSGCESY 318
           NY+ PQ+L  I +R +I A+L+    C  Y
Sbjct: 292 NYIAPQSLNIISARDDIHAYLNSPDRCPKY 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,302,622
Number of Sequences: 27780
Number of extensions: 426404
Number of successful extensions: 870
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)