Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10857
         (767 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22930.1 68417.m03311 dihydroorotase, mitochondrial / DHOase ...    29   2.6  
At4g16410.1 68417.m02483 expressed protein contains Pfam PF05421...    29   2.6  
At4g32590.1 68417.m04640 ferredoxin-related contains Pfam profil...    29   3.4  
At4g25850.1 68417.m03718 oxysterol-binding family protein contai...    29   3.4  
At1g16390.1 68414.m01960 organic cation transporter-related low ...    29   4.5  

>At4g22930.1 68417.m03311 dihydroorotase, mitochondrial / DHOase
           (PYR4) identical to SP|O04904 Dihydroorotase,
           mitochondrial precursor (EC 3.5.2.3) (DHOase)
           {Arabidopsis thaliana}
          Length = 377

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 205 RKNAKLRTRRLRPVFTLTDPDIWF*HKNSKPMKH 306
           R + K++TR +R   T+T PD W  H     + H
Sbjct: 21  RSSEKVKTRAVRMELTITQPDDWHLHLRDGDLLH 54


>At4g16410.1 68417.m02483 expressed protein contains Pfam PF05421:
           Protein of unknown function (DUF751)
          Length = 185

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 47  PSQELSPNTELHIQCRGSRRALDTRPLLNQRSKK*RRKVLPSPRPWRFPTGVGG 208
           PS  +   T   ++C  +RR L T+   N + ++ +   L   R WR+   VGG
Sbjct: 33  PSSSIRNRTSCLVRCGSARRRLTTKSSRNSKLERAQPPPLGLERHWRYAV-VGG 85


>At4g32590.1 68417.m04640 ferredoxin-related contains Pfam profile:
           PF00111 2Fe-2S iron-sulfur cluster binding domain
          Length = 173

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 110 LDTRPLLNQRSKK*RRKVLPSPRPWRF--PTGVGGKMLNSGLVV 235
           LD R LLN+R+    R +   P  WR    T VG K  NSG VV
Sbjct: 122 LDGRDLLNERTDTENRYLKKKPESWRLACQTIVGNKE-NSGKVV 164


>At4g25850.1 68417.m03718 oxysterol-binding family protein contains
           Pfam profile PF01237: Oxysterol-binding protein
          Length = 383

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 72  RSSISSAEAAGEPWIPDHY 128
           R+S+   EA+GE W+P H+
Sbjct: 339 RASLKQREASGESWVPKHF 357


>At1g16390.1 68414.m01960 organic cation transporter-related low
           similarity to Organic cation/carnitine transporter 2
           (Solute carrier family 22, member 5) (High-affinity
           sodium-dependent carnitine cotransporter) from {Homo
           sapiens} SP|O76082, {Rattus norvegicus} SP|O70594;
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 518

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 718 YREMKLGTTNLNFGLYVGCLF 656
           Y  M L  TNLNF LY+G +F
Sbjct: 340 YYGMPLALTNLNFNLYLGVVF 360


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,210,131
Number of Sequences: 28952
Number of extensions: 395255
Number of successful extensions: 796
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)