Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10856
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr...    28   1.4  
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    27   2.4  
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.1  
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    26   5.5  
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    26   7.2  
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    26   7.2  

>SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +3

Query: 183 QPSNWNLNRF--IEDRLSTGTQVAHLVQQLHS 272
           QP NW+   F  ++DR+  G+ ++HL ++  S
Sbjct: 7   QPENWHEQDFRAVDDRVRGGSSISHLTEEKDS 38


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +1

Query: 355 VHLTNACTPLFRQ 393
           VHL NAC+PLFR+
Sbjct: 140 VHLYNACSPLFRE 152


>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 455

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 433 QTDYSRH*RLADQKTVNKGVTSRSPLPLHSVNKTYFFCKKV 555
           Q D S     A Q T+NK   S +P  ++ +NK+  F + V
Sbjct: 89  QHDASNQPSQAAQTTINKNTESATPKTVNEINKSQEFQEHV 129


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 59  WQFI*TCPDSFDNGITGAISSSSEKLAIVV 148
           W  + T   S   GITG     SEKLA+ V
Sbjct: 109 WLLVHTLKSSSHKGITGIAVHPSEKLALTV 138


>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 276 CASVIVGPNEPLVF 235
           C +++VGPN P+VF
Sbjct: 165 CVALLVGPNAPIVF 178


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 672 FIKFYVTFLLNYNYIFTYSHI 610
           F+KF  T++L  +Y+  Y+HI
Sbjct: 165 FLKFGATYVLTKSYLAKYTHI 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,155,430
Number of Sequences: 5004
Number of extensions: 62971
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)