Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10856
         (805 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0318 - 2826824-2826847,2828497-2828871                           30   1.9  
10_08_0048 - 14441540-14441620,14442044-14442111,14442275-144424...    28   10.0 

>08_01_0318 - 2826824-2826847,2828497-2828871
          Length = 132

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 625 HIFTY*IWCNYCAQ*LLLYYAITQLFYKKNK 533
           H + + IW +Y A   L  YA+  LF ++NK
Sbjct: 43  HCYRFFIWLSYLASDALAIYALATLFNRRNK 73


>10_08_0048 -
           14441540-14441620,14442044-14442111,14442275-14442493,
           14442506-14444508,14447541-14448410,14448533-14448576,
           14449920-14450093
          Length = 1152

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 100 HHRSNILILRKTSDSGKLPLKPSCYSEI 183
           HH  +I  L K +    + L PSCY ++
Sbjct: 889 HHEDDIAALLKDAQQAGIQLDPSCYEDL 916


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,270,187
Number of Sequences: 37544
Number of extensions: 368901
Number of successful extensions: 694
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)