Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10853
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    33   0.057
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    26   5.0  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    26   6.6  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    26   6.6  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.7  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 32.7 bits (71), Expect = 0.057
 Identities = 23/85 (27%), Positives = 40/85 (47%)
 Frame = +3

Query: 495 NNSRTLTKYGKKMKEMNSFRADTLRPTLRTSKSSADLKKRHSSSEQIYMGSSLSDNSNYG 674
           ++S++ + +   +   +S  + TL     TS SS+  +   SSS    + S  S +S+  
Sbjct: 360 SSSKSSSSFSSTVSSSSSTSSSTL-----TSSSSSSSRPASSSSHSSSLSSHKSSSSSKS 414

Query: 675 SHHNLYSQWYHGTQKYRHSSLDVSH 749
           S   + S +YH +   R SS   SH
Sbjct: 415 SSAPVSSAFYHNSTSSRSSSHSSSH 439


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 179 STDNELEKLVMWKEV 223
           S DN+LEKL +WK++
Sbjct: 20  SNDNDLEKLRVWKDI 34


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +3

Query: 492  RNNSRTLTKYGKKMKEMNSFRADTLRPTLRTSKSSADLKKRHSSSEQIYMGSSLSDNSNY 671
            + +  T  KY +K    +S R  TL  ++  +K S+  KK+    E+   G   S     
Sbjct: 1208 KTDQPTKRKYNRKAPTKSSTRQTTLDGSISNTKKSSRTKKK--KEEETNRGDETSPEGTV 1265

Query: 672  G 674
            G
Sbjct: 1266 G 1266


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 21/57 (36%), Positives = 25/57 (43%)
 Frame = +3

Query: 507 TLTKYGKKMKEMNSFRADTLRPTLRTSKSSADLKKRHSSSEQIYMGSSLSDNSNYGS 677
           T    GK  K   S        + + SK  A  +K HSSSE    GSS SD S+  S
Sbjct: 62  TTEDVGKHKKTKESLEKSN-DDSQKISKKGAPPEKAHSSSEASGSGSS-SDESDSSS 116


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 23/81 (28%), Positives = 34/81 (41%)
 Frame = +3

Query: 435 SKSG*ISRFMVVIKYTPTDRNNSRTLTKYGKKMKEMNSFRADTLRPTLRTSKSSADLKKR 614
           S SG IS   +      T  ++S  +T         +S  + +  P+  +SKSS+  K  
Sbjct: 122 SYSGTISSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSS--PSSSSSKSSSSSKSS 179

Query: 615 HSSSEQIYMGSSLSDNSNYGS 677
            SSS      SS S +S   S
Sbjct: 180 SSSSSSSKSSSSSSSSSKSSS 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,300
Number of Sequences: 5004
Number of extensions: 62744
Number of successful extensions: 194
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)