Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10853
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913...    29   5.2  
09_06_0205 - 21567467-21567655,21567791-21567876,21567965-215680...    29   5.2  
06_03_0597 - 22616859-22616935,22617225-22617308,22617637-22617832     28   6.9  
03_02_0021 - 5049705-5049713,5049744-5049770,5049877-5049940,505...    28   6.9  
09_06_0367 + 22601881-22602097,22602212-22603254                       28   9.1  
03_05_1004 + 29621209-29621590,29622615-29622827,29622974-296233...    28   9.1  

>10_08_0198 +
           15688142-15690427,15690524-15690607,15691232-15691336,
           15691420-15691528,15693037-15693188,15693278-15693583
          Length = 1013

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 492 RNNSRTLTKYGKKMKEMNSFRADTLRPTLRTSKSSADLKKRHSSSEQIYMGSSLSD 659
           R+ SRT      + K  +S R  + R   R S+SSAD  K  S+ E     + LS+
Sbjct: 109 RSGSRTSGHDVSRSKSRSSDRTSSDRADTRDSRSSADQSKNRSAREAHDYRNELSE 164


>09_06_0205 -
           21567467-21567655,21567791-21567876,21567965-21568037,
           21568267-21568326,21568887-21568935,21569328-21569431,
           21569587-21569640,21569719-21569763,21569817-21569879,
           21570415-21570615,21570620-21570797,21570900-21570993,
           21571075-21572478,21572560-21572604,21572710-21572788,
           21573424-21573589,21573679-21573771,21573872-21573929,
           21574063-21574120,21574210-21574367,21575130-21575177,
           21575269-21575320,21575404-21575529
          Length = 1160

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = +3

Query: 504 RTLTKYGKK----MKEMNSFRADTLRPTLRTSKSSADLKKRH 617
           RT+T Y KK    + E+ +   DT  P  R  KSS +L +RH
Sbjct: 264 RTITDYWKKHAPQLPEVKAIGNDTCVPLERDVKSSQELLRRH 305


>06_03_0597 - 22616859-22616935,22617225-22617308,22617637-22617832
          Length = 118

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
 Frame = -3

Query: 377 VTPTASSVHPPAS------INVAKMKCPLPTTSKNQRPSGI 273
           VTPTA++V PPAS      + +  +  PLP +S+++ P  +
Sbjct: 26  VTPTAAAVAPPASPGLSIELTIHAVVRPLPPSSESKPPPAV 66


>03_02_0021 -
           5049705-5049713,5049744-5049770,5049877-5049940,
           5050019-5050806,5050888-5051046,5051778-5052419
          Length = 562

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = +1

Query: 367 VGVTPPSPFYVEECESCLELFYEVSLDKYLASWLSSNTHPQIETTPELS 513
           V   PP    V EC SC  L  E  L  +    L  + HP    TP+L+
Sbjct: 19  VTTQPPLSRAVSECSSCARLVLERHLHTHPFFPLLPSLHPLPLVTPDLA 67


>09_06_0367 + 22601881-22602097,22602212-22603254
          Length = 419

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +3

Query: 585 SKSSADLKKRHSSSEQIYMGSSLSDNSNYGSHHNLYSQWYHGTQKYRH 728
           S SS+  KK++ +SE+   GSS  +NSN     NL ++    +  YRH
Sbjct: 33  SNSSSSSKKKNLASERSLGGSSRDNNSNL---VNLVNEIVAESVTYRH 77


>03_05_1004 +
           29621209-29621590,29622615-29622827,29622974-29623337,
           29623751-29624573
          Length = 593

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 534 KEMNSFRADTLRPTLRTSKSSADLKKRHSSSEQIYMGSSLS 656
           ++M ++ A+T  P   + + S DL  +H+ SEQ+    SLS
Sbjct: 301 QQMKNYAANTANPC--SLQYSRDLANKHNESEQVQDSDSLS 339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,149,257
Number of Sequences: 37544
Number of extensions: 387840
Number of successful extensions: 1160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)