Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10853
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43064| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   1e-09
SB_51870| Best HMM Match : TPR_2 (HMM E-Value=1.1e-10)                 31   1.00 
SB_47240| Best HMM Match : Pkinase_C (HMM E-Value=2.8e-06)             30   1.7  
SB_18386| Best HMM Match : CH (HMM E-Value=2.8e-26)                    30   2.3  
SB_31266| Best HMM Match : PKI (HMM E-Value=1)                         30   2.3  
SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)                      29   4.0  
SB_53179| Best HMM Match : BTB (HMM E-Value=3.3e-21)                   29   4.0  
SB_50943| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_58013| Best HMM Match : ABC_membrane (HMM E-Value=6.3e-28)          29   5.3  
SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_12879| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_54900| Best HMM Match : Mic1 (HMM E-Value=2)                        28   9.3  
SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)                     28   9.3  

>SB_43064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 30/86 (34%), Positives = 46/86 (53%)
 Frame = +1

Query: 229 SRT*KAKQNDGQDYRIPDGRWFLLVVGKGHFILATLMEAGGCTEDAVGVTPPSPFYVEEC 408
           +R  K +    QDY+ PD R FLL+VG  H ++  L+EAGG  + A G   P P+YVE+ 
Sbjct: 429 TRRHKKESRKSQDYKEPDARHFLLIVGLKHILMCVLLEAGGAAKWAQGTPGPDPYYVEQV 488

Query: 409 ESCLELFYEVSLDKYLASWLSSNTHP 486
           ++ +       L     +  SS++ P
Sbjct: 489 KNTIMQIETQDLASICEASASSSSAP 514



 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
 Frame = +2

Query: 2   ELEAADYREWTDDFENFQRLYTVIXXXXXXXXXXXXXXXQDEDLKEINAFLKLNGVLALS 181
           ELEAADY E  D+    +R+YT++                 ED ++I  + K   +L + 
Sbjct: 353 ELEAADYGELADELFEIRRVYTILGSCVFYKGILLANHLFSEDFEDITLYCKYYCLLDVG 412

Query: 182 TDNELEKLVMWKEVFI-HEHRKQSK 253
               + +LV+W+EV +   H+K+S+
Sbjct: 413 KQQRVGQLVVWREVHLTRRHKKESR 437


>SB_51870| Best HMM Match : TPR_2 (HMM E-Value=1.1e-10)
          Length = 279

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 20/81 (24%), Positives = 39/81 (48%)
 Frame = +1

Query: 271 RIPDGRWFLLVVGKGHFILATLMEAGGCTEDAVGVTPPSPFYVEECESCLELFYEVSLDK 450
           RIPD  W LL++G G   + T +      +        S   ++  E+  E  Y +++ +
Sbjct: 56  RIPDELWALLIIGGGGVAVFTFV----LYKKKQVADMKSTLKIKLAEAKAEHLYRLTIQE 111

Query: 451 YLASWLSSNTHPQIETTPELS 513
           YL+S + ++    IE + ++S
Sbjct: 112 YLSSGMDTDDDAVIEVSLKMS 132


>SB_47240| Best HMM Match : Pkinase_C (HMM E-Value=2.8e-06)
          Length = 619

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 492 RNNSRTLTKYGKKMKEMNSFRADTLRPTLRTSKSSADLKKRHSSSEQI 635
           R+ + TL    ++ K       DTL+P++R S S   LK+R   +E+I
Sbjct: 302 RHEATTLLDDAREAKRDLEKELDTLKPSVRRSDSVMALKRREELAEEI 349


>SB_18386| Best HMM Match : CH (HMM E-Value=2.8e-26)
          Length = 589

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 585 SKSSADLKKRHSSSEQIYMGSSLSDNSNYGSHHNLYSQWYHGTQKYRHS 731
           S SS+      SSS     G+ L   S   S+HN Y +  H  + YRH+
Sbjct: 467 SISSSSSSSSSSSSSSSSTGAQLLTPSKPSSNHNHYHRRRHHHRNYRHN 515


>SB_31266| Best HMM Match : PKI (HMM E-Value=1)
          Length = 1507

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 319  FILATLMEAGGCTEDAVGVTPPSPFYVEECESCLEL 426
            F+++ L     C +D V +TP  P YVE   SC+ L
Sbjct: 1317 FLMSNLESLSDCFDDEV-LTPKMPLYVELKNSCVSL 1351


>SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = +3

Query: 189 MNWKNLLCGRKFLFTNIESKAK*WAGLQDTRWALVLTRSWQGAFHFSYINGSRWMYRRRC 368
           ++   L+   K      E+K + WAGL +     ++    + A   SY +GS   Y  RC
Sbjct: 30  LSGNTLVLNGKAYIQYYEAKERLWAGLSNGHRYPIIKSGDKIALKMSYTSGSNHKYYMRC 89

Query: 369 ---WCY 377
              +CY
Sbjct: 90  TTSYCY 95


>SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)
          Length = 1691

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 26/71 (36%), Positives = 32/71 (45%)
 Frame = +1

Query: 343 AGGCTEDAVGVTPPSPFYVEECESCLELFYEVSLDKYLASWLSSNTHPQIETTPELSLNT 522
           AG  T  A   TP +  YV   E+   +  EVS+   L+S  SS   P I    EL  + 
Sbjct: 621 AGYSTSSASSTTPKAVNYVTFKEN--HVSKEVSVPSPLSSDASSPASPSILGETELPCSI 678

Query: 523 GRK*RK*TPLE 555
           GRK  K   LE
Sbjct: 679 GRKEGKSRTLE 689


>SB_53179| Best HMM Match : BTB (HMM E-Value=3.3e-21)
          Length = 604

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +3

Query: 492 RNNSRTLTKYGKKMKEMNSFRA--DTLRPTLRTSKSSADLKKRHSSSEQIYMGS 647
           R N+R LT      + + +F    D +RP LR  K     +KR  + EQ+ + S
Sbjct: 138 RTNTRALTAQAPVSRNLKTFLNLFDPIRPILRARKVFGSFEKRAPAYEQLLIHS 191


>SB_50943| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 369 WCYTPFAVLRRRMRELPRTFL*SKSG*ISRFMVVIKYT-PTDRNNSRTLTKYGKKMKEMN 545
           WC T  A + ++ R+LP      K G    + V+I+   PT ++  RT+TK   +   + 
Sbjct: 259 WCLTNNAKVLKKPRQLP------KIGRSDHYAVLIQQAHPTQKSGKRTITKRDTRDSALR 312

Query: 546 SF 551
            F
Sbjct: 313 GF 314


>SB_58013| Best HMM Match : ABC_membrane (HMM E-Value=6.3e-28)
          Length = 951

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 546 SFRADTLRPTLRTSKSSADLKKRHSSSEQIYMGSSLSD 659
           SFR+++L P  R +  S   K RHS+ E + M +   D
Sbjct: 336 SFRSESLEPFKRQASKSESHKSRHSAGEGMPMKAPPED 373


>SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +3

Query: 543 NSFRADTLRPTLRTSKSSADLKKRHSSSEQIYMGSSLSDNSNYGSHHNLYSQWYHGTQKY 722
           +S  +++ R +  +S S+++     SSS     GSS S NSN  S+ N  S     +   
Sbjct: 117 SSSSSNSSRSSSSSSNSNSNSSSSSSSSSSSSSGSSSSSNSNSNSNSNSSSSSNSSSNSN 176

Query: 723 RHSS 734
            +SS
Sbjct: 177 SNSS 180


>SB_12879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 628 NKYTWGPV*VIILITEAITTFTVNGIM 708
           N Y WGP+ +   + E ++TF + G++
Sbjct: 639 NSYVWGPIVIGNTVVERVSTFKLLGVV 665


>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1755

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +3

Query: 537 EMNSFRADTLRPTLRTSKSSADLKKRHSSSEQIYMGSSLSDNSNYGSHHNLYSQW-YHGT 713
           E+ S+  DT     + +++  +    + +  Q   GS  SD +++    N Y+Q  YHG 
Sbjct: 681 EIGSYSPDTNSNEEQYNENGFEYNGHYGADHQ---GSYHSDPNSFHGDQNSYNQGSYHGD 737

Query: 714 QKYRHSSLDVSH 749
           Q  RH +    H
Sbjct: 738 QDNRHDNQGSYH 749


>SB_54900| Best HMM Match : Mic1 (HMM E-Value=2)
          Length = 243

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +1

Query: 406 CESCLELFYEVSLDKYLASWLSS---NTHPQIET 498
           C++C E    +  +KYL S L+S    T P++ET
Sbjct: 33  CDACREALQNLGKEKYLLSILTSYAKKTEPELET 66


>SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)
          Length = 729

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 546 SFRADTLRPTLRTSKSSADLKKRHSSSEQIYMGSSLS 656
           S+R +T   +LR+S S   L++  S S  +  GSS S
Sbjct: 108 SYRRETSSSSLRSSGSETQLRRESSQSSIVRRGSSSS 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,421,305
Number of Sequences: 59808
Number of extensions: 455531
Number of successful extensions: 1442
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)