Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10853
(751 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC130611-1|AAI30612.1| 942|Homo sapiens inturned planar cell po... 56 1e-07
AB033110-1|BAA86598.1| 953|Homo sapiens KIAA1284 protein protein. 56 1e-07
Z73678-1|CAA98022.1| 726|Homo sapiens plakophilin 1 protein. 31 4.4
Z34974-1|CAA84426.1| 726|Homo sapiens plakophilin protein. 31 4.4
X79293-1|CAA55881.1| 725|Homo sapiens band-6-protein protein. 31 4.4
BC114571-1|AAI14572.1| 726|Homo sapiens plakophilin 1 (ectoderm... 31 4.4
>BC130611-1|AAI30612.1| 942|Homo sapiens inturned planar cell
polarity effector homolog (Drosophila) protein.
Length = 942
Score = 56.4 bits (130), Expect = 1e-07
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Frame = +1
Query: 277 PDGRWFLLVVGKGHFILATLMEAGGCTEDAVGVTPPSPFYVEECESCLELFYEVS--LDK 450
P+GR+FLLVVG H++L L+EAGGC A+G P YV++ ++ L V +D+
Sbjct: 585 PEGRYFLLVVGLKHYMLCVLLEAGGCASKAIGSPGPDCVYVDQVKTTLHQLDGVDSRIDE 644
Query: 451 YLAS 462
LAS
Sbjct: 645 RLAS 648
Score = 49.6 bits (113), Expect = 1e-05
Identities = 28/106 (26%), Positives = 52/106 (49%)
Frame = +2
Query: 2 ELEAADYREWTDDFENFQRLYTVIXXXXXXXXXXXXXXXQDEDLKEINAFLKLNGVLALS 181
+LEAAD+ E ++D+ + +RLYT++ +DL +I + + +L L+
Sbjct: 492 DLEAADFAELSEDYYDMRRLYTILGSSLFYKGYLICSHLPKDDLIDIAVYCRHYCLLPLA 551
Query: 182 TDNELEKLVMWKEVFIHEHRKQSKMMGRTTGYPMGVGSYS*LARGI 319
+ +L++W+EVF +H + T +P G Y L G+
Sbjct: 552 AKQRIGQLIIWREVF-PQHHLRPLADSSTEVFPEPEGRYFLLVVGL 596
>AB033110-1|BAA86598.1| 953|Homo sapiens KIAA1284 protein protein.
Length = 953
Score = 56.4 bits (130), Expect = 1e-07
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Frame = +1
Query: 277 PDGRWFLLVVGKGHFILATLMEAGGCTEDAVGVTPPSPFYVEECESCLELFYEVS--LDK 450
P+GR+FLLVVG H++L L+EAGGC A+G P YV++ ++ L V +D+
Sbjct: 596 PEGRYFLLVVGLKHYMLCVLLEAGGCASKAIGSPGPDCVYVDQVKTTLHQLDGVDSRIDE 655
Query: 451 YLAS 462
LAS
Sbjct: 656 RLAS 659
Score = 49.6 bits (113), Expect = 1e-05
Identities = 28/106 (26%), Positives = 52/106 (49%)
Frame = +2
Query: 2 ELEAADYREWTDDFENFQRLYTVIXXXXXXXXXXXXXXXQDEDLKEINAFLKLNGVLALS 181
+LEAAD+ E ++D+ + +RLYT++ +DL +I + + +L L+
Sbjct: 503 DLEAADFAELSEDYYDMRRLYTILGSSLFYKGYLICSHLPKDDLIDIAVYCRHYCLLPLA 562
Query: 182 TDNELEKLVMWKEVFIHEHRKQSKMMGRTTGYPMGVGSYS*LARGI 319
+ +L++W+EVF +H + T +P G Y L G+
Sbjct: 563 AKQRIGQLIIWREVF-PQHHLRPLADSSTEVFPEPEGRYFLLVVGL 607
>Z73678-1|CAA98022.1| 726|Homo sapiens plakophilin 1 protein.
Length = 726
Score = 31.1 bits (67), Expect = 4.4
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Frame = +3
Query: 489 DRNNSRTLTKYGKKMKEMNSFRADTLRPTLRT-----SKSSADLKKRHSSSEQIYMGSSL 653
D++NS +KMK S R + T SKSS HS+ +Y G L
Sbjct: 17 DQDNSTLALPSDQKMKTGTSGRQRVQEQVMMTVKRQKSKSSQSSTLSHSNRGSMYDG--L 74
Query: 654 SDNSNYG--SHHNLYSQWYHG 710
+DN NYG S + YS++ G
Sbjct: 75 ADNYNYGTTSRSSYYSKFQAG 95
>Z34974-1|CAA84426.1| 726|Homo sapiens plakophilin protein.
Length = 726
Score = 31.1 bits (67), Expect = 4.4
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Frame = +3
Query: 489 DRNNSRTLTKYGKKMKEMNSFRADTLRPTLRT-----SKSSADLKKRHSSSEQIYMGSSL 653
D++NS +KMK S R + T SKSS HS+ +Y G L
Sbjct: 17 DQDNSTLALPSDQKMKTGTSGRQRVQEQVMMTVKRQKSKSSQSSTLSHSNRGSMYDG--L 74
Query: 654 SDNSNYG--SHHNLYSQWYHG 710
+DN NYG S + YS++ G
Sbjct: 75 ADNYNYGTTSRSSYYSKFQAG 95
>X79293-1|CAA55881.1| 725|Homo sapiens band-6-protein protein.
Length = 725
Score = 31.1 bits (67), Expect = 4.4
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Frame = +3
Query: 489 DRNNSRTLTKYGKKMKEMNSFRADTLRPTLRT-----SKSSADLKKRHSSSEQIYMGSSL 653
D++NS +KMK S R + T SKSS HS+ +Y G L
Sbjct: 17 DQDNSTLALPSDQKMKTGTSGRQRVQEQVMMTVKRQKSKSSQSSTLSHSNRGSMYDG--L 74
Query: 654 SDNSNYG--SHHNLYSQWYHG 710
+DN NYG S + YS++ G
Sbjct: 75 ADNYNYGTTSRSSYYSKFQAG 95
>BC114571-1|AAI14572.1| 726|Homo sapiens plakophilin 1 (ectodermal
dysplasia/skin fragility syndrome) protein.
Length = 726
Score = 31.1 bits (67), Expect = 4.4
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Frame = +3
Query: 489 DRNNSRTLTKYGKKMKEMNSFRADTLRPTLRT-----SKSSADLKKRHSSSEQIYMGSSL 653
D++NS +KMK S R + T SKSS HS+ +Y G L
Sbjct: 17 DQDNSTLALPSDQKMKTGTSGRQRVQEQVMMTVKRQKSKSSQSSTLSHSNRGSMYDG--L 74
Query: 654 SDNSNYG--SHHNLYSQWYHG 710
+DN NYG S + YS++ G
Sbjct: 75 ADNYNYGTTSRSSYYSKFQAG 95
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,217,600
Number of Sequences: 237096
Number of extensions: 2162011
Number of successful extensions: 5011
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5004
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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