Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10853
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44050.1 68418.m05390 MATE efflux family protein similar to r...    31   0.82 
At5g12170.1 68418.m01428 expressed protein similar to unknown pr...    30   1.4  
At2g33850.1 68415.m04155 expressed protein contains 1 transmembr...    29   2.5  
At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel...    29   4.4  
At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel...    29   4.4  
At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel...    29   4.4  
At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein / ...    28   7.6  
At3g07770.1 68416.m00947 heat shock protein-related strong simil...    28   7.6  
At1g72100.1 68414.m08334 late embryogenesis abundant domain-cont...    28   7.6  

>At5g44050.1 68418.m05390 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 491

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -1

Query: 643 PMYICSEELWRFFRSADDFDVLSVGLSVSALKEFISFIFFPYLVRVLE 500
           PMYI +  + +F    DD   LS  +SV A+    SF FF  + R L+
Sbjct: 138 PMYIFATPILKFMGQPDDIAELSGIISVWAIPTHFSFAFFFPINRFLQ 185


>At5g12170.1 68418.m01428 expressed protein similar to unknown
           protein (pir||T09909)
          Length = 276

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 690 KGCDGFRN*NYHSNWTPCIFVQRNCGVSLDLLMILMFSVLVLACL 556
           KGCDG       + + P +FV  N G ++ LL +L  S  V++CL
Sbjct: 173 KGCDG-------APFLPLLFVIMNIGYNIALLRLLKISSAVVSCL 210


>At2g33850.1 68415.m04155 expressed protein contains 1 transmembrane
           domain; similar to Protein E6 (Swiss-Prot:Q01197)
           [Gossypium hirsutum]
          Length = 267

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = +3

Query: 486 TDRNNSR-TLTKYGKKMKEMNSFRADTLRPTLRTSKSSADLKKRHSSSEQIY---MGSSL 653
           TD NN      KY   +   +SF   +L  T +T +S  + K+ +  + +IY     +S 
Sbjct: 81  TDNNNEELNNNKYEDNVNYDDSFSTPSLSETAQTQESYKNYKESYPKTTEIYDNNKDTSY 140

Query: 654 SDNSN-YGS 677
            +NSN YG+
Sbjct: 141 YENSNAYGT 149


>At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC5) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc5) GI:4581205 from [Arabidopsis thaliana]
          Length = 710

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = -1

Query: 619 LWRFFRSADDFDVLSVGLSVSALKEFISFIFFPYLVRVL----ELFRSVGVYLMTTMKRD 452
           +WRF +S++  DVL+   +  AL   +   + P  +RVL    EL R+ GV+  T     
Sbjct: 200 VWRFLQSSNGSDVLA---TKQALLFIVLVQYIPRFLRVLPLTSELKRTAGVFAETAWAGA 256

Query: 451 IYPDLLH 431
            Y  LL+
Sbjct: 257 AYYLLLY 263


>At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC5) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc5) GI:4581205 from [Arabidopsis thaliana]
          Length = 717

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = -1

Query: 619 LWRFFRSADDFDVLSVGLSVSALKEFISFIFFPYLVRVL----ELFRSVGVYLMTTMKRD 452
           +WRF +S++  DVL+   +  AL   +   + P  +RVL    EL R+ GV+  T     
Sbjct: 207 VWRFLQSSNGSDVLA---TKQALLFIVLVQYIPRFLRVLPLTSELKRTAGVFAETAWAGA 263

Query: 451 IYPDLLH 431
            Y  LL+
Sbjct: 264 AYYLLLY 270


>At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC5) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc5) GI:4581205 from [Arabidopsis thaliana]
          Length = 717

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = -1

Query: 619 LWRFFRSADDFDVLSVGLSVSALKEFISFIFFPYLVRVL----ELFRSVGVYLMTTMKRD 452
           +WRF +S++  DVL+   +  AL   +   + P  +RVL    EL R+ GV+  T     
Sbjct: 207 VWRFLQSSNGSDVLA---TKQALLFIVLVQYIPRFLRVLPLTSELKRTAGVFAETAWAGA 263

Query: 451 IYPDLLH 431
            Y  LL+
Sbjct: 264 AYYLLLY 270


>At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein /
           carbohydrate-binding domain-containing protein  ;
           contains Pfam profiles PF00331: Glycosyl hydrolase
           family 10, PF02018: Carbohydrate binding domain
          Length = 752

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 604 RSADDFDVLSVGLSVSALKEFISFIFFPYLVRVLELFRSVGV 479
           R  D+     + L  S L +  SF  FPY+V+V + + S  V
Sbjct: 371 RQVDEVRKRDIVLKFSGLNDDESFDLFPYIVKVKQTYNSFPV 412


>At3g07770.1 68416.m00947 heat shock protein-related strong
           similarity to heat-shock protein [Secale cereale]
           GI:556673; contains Pfam profiles PF02518: ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein, PF00183: Hsp90 protein
          Length = 803

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +3

Query: 546 SFRADTLRPTLRTSKSSADLKKRHSSSE-QIYMGSSLSDNSNYGSHHNLYSQWYHGTQKY 722
           SFR      T R+S S+ D+K+  + S     + +  S NS   +  N+ + W+ G   Y
Sbjct: 19  SFRIAAAASTSRSSPSATDVKRSDTESRWYSSLTNGQSKNSGSFAQLNMKTNWFMG---Y 75

Query: 723 RHSS 734
           R+ S
Sbjct: 76  RNES 79


>At1g72100.1 68414.m08334 late embryogenesis abundant
           domain-containing protein / LEA domain-containing
           protein low similarity to embryogenic gene [Betula
           pendula] GI:4539485; contains Pfam profile PF02987: Late
           embryogenesis abundant protein
          Length = 480

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 298 LVVGKGHFILATLMEAGGCTEDAVGVTPPSPFYVEECESCLEL 426
           ++V  GH ++    +  G T   V ++PPS    EE E+ +E+
Sbjct: 39  VIVKDGHHVVVVEYDRDGKTNTRVSISPPSADQGEEKENEVEM 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,694,354
Number of Sequences: 28952
Number of extensions: 318564
Number of successful extensions: 1011
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)