Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10851
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 168 6e-43
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 168 8e-43
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 168 8e-43
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 101 1e-22
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 94 2e-20
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 65 8e-12
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 48 1e-06
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 44 2e-05
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.017
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 34 0.023
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 31 0.16
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.28
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 30 0.38
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.50
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 28 1.5
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 28 1.5
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 27 2.0
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 2.0
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c... 27 2.0
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 27 3.5
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 26 4.6
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 8.1
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 25 8.1
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 168 bits (409), Expect = 6e-43
Identities = 77/84 (91%), Positives = 80/84 (95%)
Frame = +3
Query: 3 SFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA 182
SFKYAWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA
Sbjct: 53 SFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCA 112
Query: 183 VLIVAAGTGEFEAGISKNGQTREH 254
VLI+ GTGEFEAGISK+GQTREH
Sbjct: 113 VLIIGGGTGEFEAGISKDGQTREH 136
Score = 126 bits (305), Expect = 2e-30
Identities = 63/120 (52%), Positives = 84/120 (70%), Gaps = 1/120 (0%)
Frame = +2
Query: 254 SLLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 433
+LLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+
Sbjct: 137 ALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGF 194
Query: 434 HGDNMLEPSTKMPWFKGWQVERKEGKLTENASLKLSMPSCHLPA-PLTSPCVFPCKTYTK 610
GDNM+EP+T MPW++GWQ E K G + + +L ++ S PA P P P + K
Sbjct: 195 QGDNMIEPTTNMPWYQGWQKETKAG-VVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYK 253
Score = 110 bits (264), Expect = 2e-25
Identities = 50/58 (86%), Positives = 54/58 (93%)
Frame = +1
Query: 517 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAP 690
GK L+EA+D+I PPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPG IV FAP
Sbjct: 223 GKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAP 280
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 168 bits (408), Expect = 8e-43
Identities = 76/84 (90%), Positives = 80/84 (95%)
Frame = +3
Query: 3 SFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA 182
SFKYAWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA
Sbjct: 53 SFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCA 112
Query: 183 VLIVAAGTGEFEAGISKNGQTREH 254
+LI+ GTGEFEAGISK+GQTREH
Sbjct: 113 ILIIGGGTGEFEAGISKDGQTREH 136
Score = 126 bits (305), Expect = 2e-30
Identities = 63/120 (52%), Positives = 84/120 (70%), Gaps = 1/120 (0%)
Frame = +2
Query: 254 SLLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 433
+LLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+
Sbjct: 137 ALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGF 194
Query: 434 HGDNMLEPSTKMPWFKGWQVERKEGKLTENASLKLSMPSCHLPA-PLTSPCVFPCKTYTK 610
GDNM+EP+T MPW++GWQ E K G + + +L ++ S PA P P P + K
Sbjct: 195 QGDNMIEPTTNMPWYQGWQKETKAG-VVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYK 253
Score = 110 bits (264), Expect = 2e-25
Identities = 50/58 (86%), Positives = 54/58 (93%)
Frame = +1
Query: 517 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAP 690
GK L+EA+D+I PPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPG IV FAP
Sbjct: 223 GKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAP 280
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 168 bits (408), Expect = 8e-43
Identities = 76/84 (90%), Positives = 80/84 (95%)
Frame = +3
Query: 3 SFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA 182
SFKYAWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA
Sbjct: 53 SFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCA 112
Query: 183 VLIVAAGTGEFEAGISKNGQTREH 254
+LI+ GTGEFEAGISK+GQTREH
Sbjct: 113 ILIIGGGTGEFEAGISKDGQTREH 136
Score = 126 bits (305), Expect = 2e-30
Identities = 63/120 (52%), Positives = 84/120 (70%), Gaps = 1/120 (0%)
Frame = +2
Query: 254 SLLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 433
+LLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+
Sbjct: 137 ALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGF 194
Query: 434 HGDNMLEPSTKMPWFKGWQVERKEGKLTENASLKLSMPSCHLPA-PLTSPCVFPCKTYTK 610
GDNM+EP+T MPW++GWQ E K G + + +L ++ S PA P P P + K
Sbjct: 195 QGDNMIEPTTNMPWYQGWQKETKAG-VVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYK 253
Score = 110 bits (264), Expect = 2e-25
Identities = 50/58 (86%), Positives = 54/58 (93%)
Frame = +1
Query: 517 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAP 690
GK L+EA+D+I PPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPG IV FAP
Sbjct: 223 GKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAP 280
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 101 bits (241), Expect = 1e-22
Identities = 47/84 (55%), Positives = 56/84 (66%)
Frame = +3
Query: 3 SFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA 182
SF YAW+LD + ER RG+T+D+A FE+ K I DAPGHRDFI MI G S AD A
Sbjct: 223 SFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFA 282
Query: 183 VLIVAAGTGEFEAGISKNGQTREH 254
VL+V + FE G +NGQTREH
Sbjct: 283 VLVVDSSQNNFERGFLENGQTREH 306
Score = 57.6 bits (133), Expect = 2e-09
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Frame = +2
Query: 272 LGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNM 448
LG+ +++V VNK+D +SE RF+EIK VS + IK +G+ + V FVPIS G N+
Sbjct: 313 LGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNL 370
Query: 449 L--EPSTKMPWFKG 484
+ + S W+KG
Sbjct: 371 IQKDSSDLYKWYKG 384
Score = 45.2 bits (102), Expect = 9e-06
Identities = 23/46 (50%), Positives = 29/46 (63%)
Frame = +1
Query: 517 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETG 654
G L+ ALD ++PP +P KPLRL + DVY+ TV GRVE G
Sbjct: 384 GPTLLSALDQLVPPEKPYRKPLRLSIDDVYRSPRSVTV-TGRVEAG 428
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 93.9 bits (223), Expect = 2e-20
Identities = 40/84 (47%), Positives = 56/84 (66%)
Frame = +3
Query: 3 SFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA 182
S+ +W LD ERE+G T+++ FET +++DAPGH+ ++ NMI G SQAD
Sbjct: 284 SWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIG 343
Query: 183 VLIVAAGTGEFEAGISKNGQTREH 254
VL+++A GEFEAG + GQTREH
Sbjct: 344 VLVISARRGEFEAGFERGGQTREH 367
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 65.3 bits (152), Expect = 8e-12
Identities = 33/77 (42%), Positives = 47/77 (61%)
Frame = +3
Query: 24 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 203
+DK E+ RGITI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A
Sbjct: 91 IDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSAT 150
Query: 204 TGEFEAGISKNGQTREH 254
G+ QTREH
Sbjct: 151 DGQMP-------QTREH 160
Score = 50.0 bits (114), Expect = 3e-07
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +1
Query: 526 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPPTSL 702
L+EA+D+ + P R TD P + ++DV+ I G GTV GRVE G LK G + S
Sbjct: 234 LMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTVVTGRVERGTLKKGAEIEIVGYGSH 293
Query: 703 LKS 711
LK+
Sbjct: 294 LKT 296
Score = 34.3 bits (75), Expect = 0.017
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +2
Query: 257 LLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY 376
LLA +GVKQ++V +NK+D EP E E+++ +S Y
Sbjct: 162 LLARQVGVKQIVVYINKVDMVEPDMIELVEMEMRELLSEY 201
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 48.4 bits (110), Expect = 1e-06
Identities = 25/63 (39%), Positives = 33/63 (52%)
Frame = +3
Query: 21 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 200
V+D L AER+RGITI+ A F + +ID PGH DF + + D AV I+
Sbjct: 67 VMDYLPAERQRGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDG 126
Query: 201 GTG 209
G
Sbjct: 127 SAG 129
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 44.0 bits (99), Expect = 2e-05
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +3
Query: 24 LDKLKAERERGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 191
LDKL+ ER RGIT+ ++ + Y + +ID PGH DF ++ + + +L+
Sbjct: 95 LDKLEVERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILL 154
Query: 192 VAAGTG 209
V A G
Sbjct: 155 VDASQG 160
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.3 bits (75), Expect = 0.017
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 19/96 (19%)
Frame = +3
Query: 24 LDKLKAERERGITIDIA----LWK---------------FETSKYYVTIIDAPGHRDFIK 146
+D ++ ERE+GITI A W+ FE S Y + IID PGH DF
Sbjct: 102 MDFMELEREKGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTI 160
Query: 147 NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 254
+ D AVL++ A +G I+ + Q R +
Sbjct: 161 EVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.9 bits (74), Expect = 0.023
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 54 GITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 209
GIT I + F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 203 GITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 31.1 bits (67), Expect = 0.16
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 102 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 197
+V+ +D PGH + M+ G + D A+L++A
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 140
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.28
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 99 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 209
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.9 bits (64), Expect = 0.38
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +3
Query: 27 DKLKAER-ERGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 149
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.50
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 111 IIDAPGHRDFIKNMITGTSQADCAVLIV 194
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 99 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 194
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 99 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 194
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +3
Query: 330 TVSPDLRKSRRKYPHTSRRLATTQLL---SLSCPFLDGTETTCWSLQPKCLGSRDGRWSV 500
+ +PD+ ++PHT +R +T + L LSC + +E + P G +D + +
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRCLSCEYSTLSEASDSMSNPLFFGDQDNGYVI 204
Query: 501 KKA 509
++
Sbjct: 205 SQS 207
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 42 ERERGITID-----IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 194
ERER ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 185 ERERVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 489
Score = 27.5 bits (58), Expect = 2.0
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = -3
Query: 581 RGLSVGRAGGRMASRASMRHFPSACLLYAPPAI 483
R +++ GG++ S ++F ++C+L+ P I
Sbjct: 9 RKITIPSVGGKLVSSGQFQNFIASCILFCCPGI 41
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.6 bits (56), Expect = 3.5
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = -3
Query: 668 PGFNTPVSTLPTGTVPIPPILYTSCRGRRRGLSVGRAGGRMASRASMRHFPSACLLYAPP 489
P +N P G+VP+P TS + R G S+ R+ R PS L P
Sbjct: 314 PNYNAPFQPAGVGSVPLP--APTSSQSLRLG-SLHRSRSPSPRSGRPRRSPSPSHLSIPS 370
Query: 488 AIP 480
+P
Sbjct: 371 TLP 373
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 26.2 bits (55), Expect = 4.6
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +2
Query: 359 KEVS---SYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKL 514
KEVS SYI +P +G+ +N+++P + P FKG + KL
Sbjct: 159 KEVSTSKSYISSGYLHPKTSPIFKKNGYATENVVDPISSSPRFKGPNYNKFNAKL 213
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 659 NTPVSTLPTGTVPIPPIL 606
N P S LPT VP+P I+
Sbjct: 666 NPPTSALPTVPVPLPSII 683
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 8.1
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 308 MDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWF 478
+D +P + F IKK+V Y+ ++ + P + G N LEP TK PW+
Sbjct: 107 LDLKKPLLPQILFGNIKKDV--YLDQV-HRPRHYRGSGSAPLFG-NFLEPLTKTPWY 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,246,887
Number of Sequences: 5004
Number of extensions: 71937
Number of successful extensions: 256
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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