Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10851
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                120   2e-27
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           93   3e-19
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              89   3e-18
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     42   5e-04
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.30 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               32   0.40 
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              31   0.92 
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              31   1.2  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.1  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_31933| Best HMM Match : PAN (HMM E-Value=3.5e-08)                   28   6.5  
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    28   6.5  
SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)             28   6.5  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_27431| Best HMM Match : HEAT (HMM E-Value=2.4)                      28   8.6  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  120 bits (288), Expect = 2e-27
 Identities = 54/56 (96%), Positives = 55/56 (98%)
 Frame = +3

Query: 3   SFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 170
           SFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 5   SFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score =  103 bits (247), Expect = 1e-22
 Identities = 47/60 (78%), Positives = 52/60 (86%)
 Frame = +1

Query: 511 ADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAP 690
           A G  L E LD+ILPP+RP+  PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGT+V F+P
Sbjct: 82  ASGVTLFEGLDSILPPSRPSGLPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTVVTFSP 141



 Score = 31.9 bits (69), Expect = 0.53
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 443 NMLEPSTKMPWFKGWQVERKEGKLTENAS 529
           NM+  +++MPWFK W +ER +    + A+
Sbjct: 53  NMITGTSQMPWFKQWTIERVDPATKKEAN 81


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 37/80 (46%), Positives = 56/80 (70%)
 Frame = +3

Query: 15  AWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 194
           +W LD  + ER++G T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL++
Sbjct: 194 SWALDTNQEERDKGNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVI 253

Query: 195 AAGTGEFEAGISKNGQTREH 254
           +A  GEFE G  + GQTREH
Sbjct: 254 SARKGEFETGFERGGQTREH 273



 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 23/49 (46%), Positives = 37/49 (75%)
 Frame = +2

Query: 254 SLLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 400
           ++LA T GVK L++ VNKMD     ++E R+EEIK +++ ++KK+G+NP
Sbjct: 274 AMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 38/64 (59%), Positives = 49/64 (76%)
 Frame = +3

Query: 63  IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 242
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 243 TREH 254
           TREH
Sbjct: 61  TREH 64


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = +3

Query: 27  DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 206
           D ++ ER+RGI++  ++  F      + I+D PGH+DF ++     +  D  ++++    
Sbjct: 55  DFMEIERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAK 114

Query: 207 G 209
           G
Sbjct: 115 G 115


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 105 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 209
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 54  GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 200
           GIT  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
 Frame = +3

Query: 27  DKLKAERERGITIDIALWKFETSK-------------YYVTIIDAPGHRDFIKNMITGTS 167
           DK    +ERGIT+D+    F+ +                +T++D PGH   IK +I G  
Sbjct: 65  DKNPQSQERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG-- 122

Query: 168 QADCAVLIVAAGTGEFEAGISKNGQTR 248
               A +I   GT   E G  ++G+ +
Sbjct: 123 ----AQIIGECGT--IEGGFGQSGKVK 143


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 30  KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 197
           + K E ER ITI +         Y    +D PGH   +  M+ G +  D A+L++A
Sbjct: 49  RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIA 96


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 111 IIDAPGHRDFIKNMITGTSQADCAVLIV 194
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +3

Query: 21   VLDKLKAERERGITI 65
            VLDKL+ ERERGIT+
Sbjct: 1977 VLDKLQVERERGITV 1991


>SB_31933| Best HMM Match : PAN (HMM E-Value=3.5e-08)
          Length = 231

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 330 YGGSVESILFTPTMSCLTPRVKASKDA 250
           Y  S+ SILF P +SCL   +K+S DA
Sbjct: 84  YKSSLGSILFLPAVSCL--EIKSSSDA 108


>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 431 WHGDNMLEPSTKMPWFKGWQVERKE 505
           +H DN    +   PWF+ W  +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 99  YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 209
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
          Length = 177

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +1

Query: 571 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAP 690
           ++P    + D Y + G+GTV  G    G+++    ++  P
Sbjct: 102 EEPSEFQIDDTYSVPGVGTVISGTCMKGIIRLNDTLLLGP 141


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +2

Query: 314  STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 454
            ST    S+  FE  KK      +S+ K    +P+  + FVP   WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113


>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 487 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLD 377
           P+LEP + G  L  + S  S  GH+ D+   ++ LL+
Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLN 414


>SB_27431| Best HMM Match : HEAT (HMM E-Value=2.4)
          Length = 195

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 342 LGSLYGGSVESILFTPTMSCLTPRVKASKD 253
           +  L+GG+ E ++ T  +SCL   ++ S D
Sbjct: 104 VAELFGGACEDVMSTANISCLAEALECSDD 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,974,865
Number of Sequences: 59808
Number of extensions: 569668
Number of successful extensions: 1830
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1828
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)