Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10851
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   180   1e-47
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   177   1e-46
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   177   1e-46
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   176   1e-46
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    33   0.003
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.9  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.7  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  180 bits (438), Expect = 1e-47
 Identities = 84/84 (100%), Positives = 84/84 (100%)
 Frame = +3

Query: 3   SFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA 182
           SFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA
Sbjct: 53  SFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA 112

Query: 183 VLIVAAGTGEFEAGISKNGQTREH 254
           VLIVAAGTGEFEAGISKNGQTREH
Sbjct: 113 VLIVAAGTGEFEAGISKNGQTREH 136



 Score =  177 bits (430), Expect = 1e-46
 Identities = 81/87 (93%), Positives = 84/87 (96%)
 Frame = +2

Query: 254 SLLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 433
           +LLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSYIKKIGYNPAAVAFVPISGW
Sbjct: 137 ALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 196

Query: 434 HGDNMLEPSTKMPWFKGWQVERKEGKL 514
           HGDNMLE S+KMPWFKGW VERKEGK+
Sbjct: 197 HGDNMLEVSSKMPWFKGWTVERKEGKV 223



 Score =  116 bits (280), Expect = 2e-28
 Identities = 53/61 (86%), Positives = 56/61 (91%)
 Frame = +1

Query: 508 QADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFA 687
           + +GKCLIEALDAILPP RPTDK LRLPLQDVYKIGGIGTVPVGRVETGVLKPG +V FA
Sbjct: 222 KVEGKCLIEALDAILPPTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFA 281

Query: 688 P 690
           P
Sbjct: 282 P 282


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  177 bits (430), Expect = 1e-46
 Identities = 81/87 (93%), Positives = 84/87 (96%)
 Frame = +2

Query: 254 SLLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 433
           +LLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSYIKKIGYNPAAVAFVPISGW
Sbjct: 64  ALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 123

Query: 434 HGDNMLEPSTKMPWFKGWQVERKEGKL 514
           HGDNMLE S+KMPWFKGW VERKEGK+
Sbjct: 124 HGDNMLEVSSKMPWFKGWTVERKEGKV 150



 Score =  136 bits (330), Expect = 1e-34
 Identities = 63/63 (100%), Positives = 63/63 (100%)
 Frame = +3

Query: 66  DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 245
           DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 60

Query: 246 REH 254
           REH
Sbjct: 61  REH 63



 Score = 46.0 bits (104), Expect = 4e-07
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = +1

Query: 508 QADGKCLIEALDAILPPARPTDK 576
           + +GKCLIEALDAILPP RPTDK
Sbjct: 149 KVEGKCLIEALDAILPPTRPTDK 171


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  177 bits (430), Expect = 1e-46
 Identities = 81/87 (93%), Positives = 84/87 (96%)
 Frame = +2

Query: 254 SLLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 433
           +LLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSYIKKIGYNPAAVAFVPISGW
Sbjct: 80  ALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 139

Query: 434 HGDNMLEPSTKMPWFKGWQVERKEGKL 514
           HGDNMLE S+KMPWFKGW VERKEGK+
Sbjct: 140 HGDNMLEVSSKMPWFKGWTVERKEGKV 166



 Score =  169 bits (412), Expect = 2e-44
 Identities = 79/79 (100%), Positives = 79/79 (100%)
 Frame = +3

Query: 18  WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 197
           WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 198 AGTGEFEAGISKNGQTREH 254
           AGTGEFEAGISKNGQTREH
Sbjct: 61  AGTGEFEAGISKNGQTREH 79



 Score =  116 bits (280), Expect = 2e-28
 Identities = 53/61 (86%), Positives = 56/61 (91%)
 Frame = +1

Query: 508 QADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFA 687
           + +GKCLIEALDAILPP RPTDK LRLPLQDVYKIGGIGTVPVGRVETGVLKPG +V FA
Sbjct: 165 KVEGKCLIEALDAILPPTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFA 224

Query: 688 P 690
           P
Sbjct: 225 P 225


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  176 bits (429), Expect = 1e-46
 Identities = 82/84 (97%), Positives = 83/84 (98%)
 Frame = +3

Query: 3   SFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA 182
           SFKYAWVLDKLKAERERGITIDIALWKFET+KYYVTIIDAPGHRDFIKNMITGTSQADCA
Sbjct: 53  SFKYAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCA 112

Query: 183 VLIVAAGTGEFEAGISKNGQTREH 254
           VLIVAAG GEFEAGISKNGQTREH
Sbjct: 113 VLIVAAGIGEFEAGISKNGQTREH 136



 Score =  165 bits (402), Expect = 3e-43
 Identities = 74/85 (87%), Positives = 80/85 (94%)
 Frame = +2

Query: 254 SLLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 433
           +LLAFTLGVKQLIVGVNKMD T+PPYSE RFEEIKKEVSSYIKKIGYN A+VAFVPISGW
Sbjct: 137 ALLAFTLGVKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYNTASVAFVPISGW 196

Query: 434 HGDNMLEPSTKMPWFKGWQVERKEG 508
           HGDNMLEPS K PW+KGW+VERK+G
Sbjct: 197 HGDNMLEPSPKTPWYKGWKVERKDG 221



 Score =  115 bits (276), Expect = 5e-28
 Identities = 53/60 (88%), Positives = 56/60 (93%)
 Frame = +1

Query: 511 ADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAP 690
           ADGK LIEALDAILPP+RPTDK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG +V FAP
Sbjct: 223 ADGKTLIEALDAILPPSRPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGMLVTFAP 282


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 33.1 bits (72), Expect = 0.003
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +3

Query: 105 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 209
           VT +D PGH  FI     G    D  VL+VAA  G
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDG 229


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 90  TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 191
           T KYY    D P +  FIKN+   ++ +D   LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 90  TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 191
           T KYY    D P +  FIKN+   ++ +D   L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 466 FG*RLQHVVSVPSRNGHESDSSWV 395
           FG  L H++ V  +N   + + WV
Sbjct: 35  FGLSLHHIIDVDEKNQILTTNCWV 58


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 309 WIPLNHHTVSPDLRKSRRKY 368
           W+P+N +  S +L   +R+Y
Sbjct: 443 WLPVNENYKSLNLAAQKREY 462


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,940
Number of Sequences: 438
Number of extensions: 4905
Number of successful extensions: 24
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)