Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10849
         (742 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    27   0.12 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   3.4  
AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    21   7.9  
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    21   7.9  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   7.9  

>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 634 GARRTARPNVAVSPHWPNADRSS 702
           G RR ARP V  +P W  A  SS
Sbjct: 40  GRRRAARPGVVTTPRWGCARASS 62


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
 Frame = -2

Query: 225 LFSQLPFVDADFLGGF-----LQRILEER 154
           L  QLPF    F GGF     LQ+++ ER
Sbjct: 359 LQQQLPFPGYPFFGGFPNAQLLQQLIRER 387


>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/43 (20%), Positives = 23/43 (53%)
 Frame = +1

Query: 76  TIKILRKKERQLKEVIIQCEEDQKNISLLQDSLEKTSQKVSIY 204
           T+KIL  K  QLK  +++ +    ++ +++  +    + V ++
Sbjct: 153 TLKILLGKYTQLKACLMEEKRPMVSLQVIKAQIYSLRETVDVF 195


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/43 (20%), Positives = 23/43 (53%)
 Frame = +1

Query: 76  TIKILRKKERQLKEVIIQCEEDQKNISLLQDSLEKTSQKVSIY 204
           T+KIL  K  QLK  +++ +    ++ +++  +    + V ++
Sbjct: 153 TLKILLGKYTQLKACLMEEKRPMVSLQVIKAQIYSLRETVDVF 195


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/43 (20%), Positives = 23/43 (53%)
 Frame = +1

Query: 76  TIKILRKKERQLKEVIIQCEEDQKNISLLQDSLEKTSQKVSIY 204
           T+KIL  K  QLK  +++ +    ++ +++  +    + V ++
Sbjct: 473 TLKILLGKYTQLKACLMEEKRPMVSLQVIKAQIYSLRETVDVF 515


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,069
Number of Sequences: 336
Number of extensions: 2583
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)