Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10849
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    34   0.019
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    30   0.30 
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    30   0.30 
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    30   0.40 
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    29   0.53 
SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.70 
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    29   0.92 
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    27   2.1  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   2.8  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    27   3.7  
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    26   6.5  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    26   6.5  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   8.6  

>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 34.3 bits (75), Expect = 0.019
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
 Frame = +1

Query: 16  EARIKDMELELDEEKRRHAETIKILRKKERQLKEVIIQCEEDQKNISLLQDSLEKTSQKV 195
           +A+I D  L+ D     ++E  KI+   E+  K+  I  E  Q+ +  L+ SLEK+S  +
Sbjct: 228 DAKIADKPLK-DSMFNSNSEKEKIMHALEKAEKDADIYSEFIQQYMEQLESSLEKSSTAI 286

Query: 196 SIYKRQLAEQEG-MSQQSVTRSDDSS 270
              + +LAE    +++ S   +DD +
Sbjct: 287 ENAQNRLAEMTAHLAESSDYDNDDDT 312


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 15/57 (26%), Positives = 34/57 (59%)
 Frame = +1

Query: 16  EARIKDMELELDEEKRRHAETIKILRKKERQLKEVIIQCEEDQKNISLLQDSLEKTS 186
           E + +DM+++LD  +   +   K++ +++  L+ +  +C +D  + SL+Q+S  K S
Sbjct: 577 EEQERDMKIQLDLLEELQSRVQKLVPERQTTLQALQQKCLQDDISESLMQNSKRKDS 633


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +1

Query: 52  EEKRRHAETIKILRKKERQLKEVIIQCEEDQKNISLLQDSLEK-TSQKVSIYKRQLAEQE 228
           EE+ R  E  ++ R+KERQ +E   +  E +K  +     LEK   +++ + ++Q  ++E
Sbjct: 87  EERIRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKELEKLEKERIRLQEQQRRKEE 146


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
 Frame = +1

Query: 43  ELDEE-KRRHAETIKILRKKE--RQLKEVIIQCEEDQKNISLLQDSLEKTSQKVSIYKRQ 213
           E++EE KR+    +K +R+KE  R  K+ +   +E+++     +   E+ +QK    KRQ
Sbjct: 575 EIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQ 634

Query: 214 LAEQEGMSQQSVTRSDD 264
              ++   +Q + R  +
Sbjct: 635 EEARKKREEQRLKREQE 651



 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +1

Query: 13  LEARIKDMELELDEEKRRHAETI-KILRKKERQLKEVII 126
           LE R +  +L+ +EE+RR  E + K   +KER+L+E  I
Sbjct: 702 LEERKRREKLDKEEEERRRRELLEKESEEKERRLREAKI 740


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 19/86 (22%), Positives = 39/86 (45%)
 Frame = +1

Query: 4    ISKLEARIKDMELELDEEKRRHAETIKILRKKERQLKEVIIQCEEDQKNISLLQDSLEKT 183
            + +  A +K +  EL+ E       ++ L  ++ +LKE +   E+D  +     +SL + 
Sbjct: 906  LQRESASLKQINNELESELLEKTSKVETLLSEQNELKEKLSLEEKDLLDTKGELESLREN 965

Query: 184  SQKVSIYKRQLAEQEGMSQQSVTRSD 261
            +  V   K +  EQ    Q+++   D
Sbjct: 966  NATVLSEKAEFNEQCKSLQETIVTKD 991


>SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 143

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 17/51 (33%), Positives = 30/51 (58%)
 Frame = +1

Query: 103 RQLKEVIIQCEEDQKNISLLQDSLEKTSQKVSIYKRQLAEQEGMSQQSVTR 255
           RQLK     C+  Q+N+  LQ   ++ SQK ++ ++QL+ Q  ++Q+   R
Sbjct: 71  RQLKR---NCDLYQRNLQKLQLLFKQQSQKNTLLEKQLSLQTELNQEKDKR 118


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 15/61 (24%), Positives = 33/61 (54%)
 Frame = +1

Query: 43  ELDEEKRRHAETIKILRKKERQLKEVIIQCEEDQKNISLLQDSLEKTSQKVSIYKRQLAE 222
           EL +  ++  E  K +RKK  +    I   EE++ + ++ +D+ E+ S +  + +R L +
Sbjct: 112 ELTQLSQKVKEKFKKMRKKPARRIVTIANDEEEEDDQTMDEDAFERKSMQGELKERNLTD 171

Query: 223 Q 225
           +
Sbjct: 172 K 172


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +1

Query: 82  KILRKKERQLKEVIIQCEEDQKNISLLQDSLEKTSQKVSIYKRQLA--EQEGMSQQS 246
           K L+KK + +  VII+C ED     L+ D+ E ++  V    R+L   E++G  +QS
Sbjct: 54  KKLKKKPKHIA-VIIECVEDGGIEGLIHDACELSAWCVCSNIRELTIYERKGFLKQS 109


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +1

Query: 112 KEVIIQCEEDQKNISLLQDSLEKTSQKVSIYKRQLAEQEGMSQQSVTRS 258
           KE+  + EE+  N+  ++DS + +S K SI   ++ + EG+      R+
Sbjct: 236 KELAGESEEEGSNVDDVEDSGDSSSDKNSI-NHEIRDNEGLEDTVFVRN 283


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +1

Query: 4   ISKLEARIKDMELELDEEK-----RRHAETIKILRKKERQLKEVIIQCEEDQK 147
           ++ +   IK  EL  D+++     + H E  K + +KERQ  + + Q EED K
Sbjct: 643 LNAINTLIKKAELVADQKQLKSLTKNHQEIEKAIHRKERQRDQYMSQ-EEDSK 694


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/65 (23%), Positives = 35/65 (53%)
 Frame = +1

Query: 13  LEARIKDMELELDEEKRRHAETIKILRKKERQLKEVIIQCEEDQKNISLLQDSLEKTSQK 192
           L+A+ KD+E ++   + R  E+  I+++ E + +E+     ED++  S ++   ++   +
Sbjct: 151 LDAQRKDLEEKVLLSQDRKLESEAIIKQNEERNEEMFQSLIEDKRLCSQVRTEYDRIRME 210

Query: 193 VSIYK 207
            S  K
Sbjct: 211 ASELK 215


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/58 (22%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
 Frame = +1

Query: 28  KDMELELDEEKRRHAETIKILRKK-ERQLKEVIIQCEEDQKNISLLQDSLEKTSQKVS 198
           K++  +  +E   + E +  LR + ER++++      E++++ISL ++ +EK + +++
Sbjct: 552 KEVLSKSSKESDDYEEVVGKLRTEAEREIEKFEKTIRENEESISLFKEEVEKLTDEIT 609


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/62 (24%), Positives = 30/62 (48%)
 Frame = +1

Query: 52  EEKRRHAETIKILRKKERQLKEVIIQCEEDQKNISLLQDSLEKTSQKVSIYKRQLAEQEG 231
           + +RR  +    LR+  +   + + Q EED KN+  +   L +    V  +++ L E+  
Sbjct: 21  KNRRRQFQEEDQLRRNNKSSNK-LSQNEEDAKNMDSVVQKLNELQNNVVAFQKLLQEKTP 79

Query: 232 MS 237
           +S
Sbjct: 80  LS 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,942
Number of Sequences: 5004
Number of extensions: 43416
Number of successful extensions: 174
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)