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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10849
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.75 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.75 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.99 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.2  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 120 HHSVRGGSEEHLSPPRF 170
           H S +  SEEHL+P RF
Sbjct: 393 HPSTQEDSEEHLTPKRF 409


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 120 HHSVRGGSEEHLSPPRF 170
           H S +  SEEHL+P RF
Sbjct: 393 HPSTQEDSEEHLTPKRF 409


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 308 GDVGAVFGGFQFTLESSDRVTLCCDMPSCSA 216
           G +    G F  TLES +RVT   D P  +A
Sbjct: 176 GGITQCIGAFDVTLESGERVTF-LDTPGHAA 205


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 117 GHHSVRGGSEEHLSPPRF 170
           GHH    GS++ +  PRF
Sbjct: 63  GHHYGAAGSQQDMPYPRF 80


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
 Frame = -2

Query: 666 GNVRASRPPSAXXX------SEHKTTDGVIEPERIVAPSINTFN 553
           G   + RPP++         SEH +T   +   +I  P+  +FN
Sbjct: 266 GAAASDRPPASASSNEHEAESEHTSTPNFLSEAKIFPPTPGSFN 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,788
Number of Sequences: 438
Number of extensions: 3318
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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