Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10847
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.77 
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    23   2.4  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   2.4  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    23   2.4  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    23   2.4  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    23   2.4  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   2.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   4.1  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   5.4  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   7.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.5  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +1

Query: 562 LSKEEIERMVNEAEKYRN---EDEQAKGDHPGQECIGILLLQHEVYH 693
           L + ++E ++ EA+  +N   +D+  K +  G  C+  +LL+  +YH
Sbjct: 577 LPEVDVEEILGEAKVLQNFDIKDKNKKVNVAGCRCVKGILLKSGLYH 623



 Score = 21.4 bits (43), Expect = 9.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 352 EYSGLVIRVGGECLSLFSGDGSVTLDECGHDTSAVSIPRERG 227
           E+ G+   +G   ++L SG+    LD  GH  +A    R RG
Sbjct: 174 EFGGITQCIGAFDVTLESGERVTFLDTPGH--AAFISMRHRG 213


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 507 SEVHQQGEQDHHYQRQRSSLQGRDRAY 587
           S  H       HY R+RS  + R+R Y
Sbjct: 219 SRTHGFQHTSSHYSRERSCSRDRNREY 245


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 507 SEVHQQGEQDHHYQRQRSSLQGRDRAY 587
           S  H       HY R+RS  + R+R Y
Sbjct: 219 SRTHGFQHTSSHYSRERSCSRDRNREY 245


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 507 SEVHQQGEQDHHYQRQRSSLQGRDRAY 587
           S  H       HY R+RS  + R+R Y
Sbjct: 219 SRTHGFQHTSSHYSRERSCSRDRNREY 245


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 507 SEVHQQGEQDHHYQRQRSSLQGRDRAY 587
           S  H       HY R+RS  + R+R Y
Sbjct: 219 SRTHGFQHTSSHYSRERSCSRDRNREY 245


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 507 SEVHQQGEQDHHYQRQRSSLQGRDRAY 587
           S  H       HY R+RS  + R+R Y
Sbjct: 208 SRTHGFQHTSSHYSRERSCSRDRNREY 234


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 507 SEVHQQGEQDHHYQRQRSSLQGRDRAY 587
           S  H       HY R+RS  + R+R Y
Sbjct: 219 SRTHGFQHTSSHYSRERSCSRDRNREY 245


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 327 TLITNPEYSSKYLR 368
           T I N  YSSKY+R
Sbjct: 199 TYIVNTNYSSKYMR 212


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 30  HDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDE 137
           +D ++VGG      V   L +  N K L     PDE
Sbjct: 69  YDFIVVGGGAARAVVAGRLSEVSNWKVLLLEAGPDE 104


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 612 SVLLCLINHTLDLFLG 565
           SVL+CL+N T    +G
Sbjct: 10  SVLICLLNETAKAIIG 25


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 6/22 (27%), Positives = 16/22 (72%)
 Frame = +2

Query: 572 KRSSVWLMRQRSTETRMNKQKE 637
           ++S +W+ + +++E   NK+K+
Sbjct: 194 EKSELWVYKSKASEEHGNKKKK 215


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 444 PRGAGGIPVS 415
           PRG GG+P S
Sbjct: 399 PRGPGGVPTS 408


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 282  VTLPSPLNRLRHSPP 326
            +T PSP  R R++PP
Sbjct: 986  MTDPSPFKRGRYTPP 1000


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,003
Number of Sequences: 438
Number of extensions: 3834
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)