Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10846
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   3.9  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    24   8.9  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    24   8.9  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    24   8.9  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 410 GGRAHSPPGVNWLMEPMDIYN 348
           GG  H P  V WL+ P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 152 KSETRKIIICVITGGRT 202
           K   +K+++C+I+ GRT
Sbjct: 229 KDAWKKVVVCIISDGRT 245


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 274 NRNAFTAHGRNRQCGGTYPRGLTRGPTTSNY-ANYNF 167
           ++N F  HG+N++       G+    T  NY A Y+F
Sbjct: 54  SQNLFERHGKNKKIAVNSEYGIIAVATEKNYVAVYHF 90


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +2

Query: 50  CVRIPQAGTNFSNELRTQQIFTIDFHGEGITSCNKSETRKIIICVITGGRTSC 208
           C +I   G+ F N + +   F+   HG+GI      ++R ++  +      SC
Sbjct: 221 CSKINITGSVFDNFIPS--FFSFGTHGDGIKQIAVDDSRSLLYVLRETSSVSC 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,954,544
Number of Sequences: 5004
Number of extensions: 38900
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)