Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10846
         (439 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490...    29   1.2  
03_06_0753 + 36015026-36015256,36015780-36015885,36016132-360161...    27   6.6  
04_01_0128 + 1398190-1398480,1399245-1399505                           27   8.7  
01_06_1522 - 37962431-37963060,37963216-37963542                       27   8.7  

>07_01_0654 -
           4900509-4900518,4900626-4900709,4900844-4901377,
           4901462-4901619,4901703-4901832,4901918-4901999,
           4902097-4902230,4902314-4902410,4902512-4902788,
           4902881-4903024
          Length = 549

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +2

Query: 68  AGTNFSNELRTQQIFTIDFHGEGITSC-NKSETRKIIICVITGGRTSCESARVGTTALPI 244
           +GT+   +    ++  +D  G GIT+C  ++E +K    ++ G      + RV      +
Sbjct: 29  SGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKKL 88

Query: 245 SAVSS 259
           +AV S
Sbjct: 89  NAVPS 93


>03_06_0753 +
           36015026-36015256,36015780-36015885,36016132-36016192,
           36016278-36016573,36016654-36016793,36016880-36016954,
           36017044-36017134,36017677-36017880,36018409-36018453,
           36018745-36018830
          Length = 444

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 293 TAAAPFQPKRIYCSRQK*AVRWYLPARTHKRSYH 192
           TAAAP QPK++  S Q        P + H+RS+H
Sbjct: 46  TAAAPDQPKQVRPSNQN------QPKKGHQRSHH 73


>04_01_0128 + 1398190-1398480,1399245-1399505
          Length = 183

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 277 SNRNAFTAHGRNRQCGGTYPRGLTRGPTTSN 185
           +  NA   HGR        PR ++  PTT+N
Sbjct: 57  NGNNAEDHHGRQAAAAAVVPRAVSTRPTTTN 87


>01_06_1522 - 37962431-37963060,37963216-37963542
          Length = 318

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 422 IT*MGGRAHSPPGVNWLMEPMD 357
           +T + G+ H PPG  WL E MD
Sbjct: 41  LTLLVGQLHLPPGGRWLDEYMD 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,455,762
Number of Sequences: 37544
Number of extensions: 278096
Number of successful extensions: 659
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)