Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10846
(439 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.96
SB_42630| Best HMM Match : Ets (HMM E-Value=0) 29 2.2
SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_42288| Best HMM Match : Transglut_N (HMM E-Value=9.2e-34) 27 6.8
SB_47985| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19) 27 8.9
SB_28221| Best HMM Match : eRF1_3 (HMM E-Value=8.7) 27 8.9
>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2317
Score = 29.9 bits (64), Expect = 0.96
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +2
Query: 131 EGITSCNKSETRKIIICVITGGRTSCESARVGTTALPISAVSSKCVSVGRVRQPL 295
+G T S R + + TGG T+ + GT A P+S + V + R+ Q L
Sbjct: 1212 QGTTVSPMSMDRTTAVPISTGGTTTAPRSTDGTAAAPMSTDGTTAVPIIRMEQLL 1266
Score = 27.9 bits (59), Expect = 3.9
Identities = 21/71 (29%), Positives = 29/71 (40%)
Frame = +2
Query: 35 VERCTCVRIPQAGTNFSNELRTQQIFTIDFHGEGITSCNKSETRKIIICVITGGRTSCES 214
++R T V I GT + T T EG + S +I+ G T+
Sbjct: 1530 IDRTTVVPISTGGTTTAPR-STDGTATAPMSTEGTRTSPMSTDGTTATPIISDGTTAAAM 1588
Query: 215 ARVGTTALPIS 247
+ GTTA PIS
Sbjct: 1589 STDGTTAAPIS 1599
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 131 EGITSCNKSETRKIIICVITGGRTSCESARVGTTALPIS 247
+G T+ +S R +IT G T+ + GTTA+P+S
Sbjct: 1651 DGTTAVPRSMDRTTAAPMITDGTTAAPMSTDGTTAVPMS 1689
Score = 27.1 bits (57), Expect = 6.8
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = +2
Query: 131 EGITSCNKSETRKIIICVITGGRTSCESARVGTTALPIS-----AVSSKC 265
+G T+ S + +IT G T+ GTTA PIS AV +KC
Sbjct: 1781 DGTTAAPMSTDGTTAVPMITNGTTAVPMITDGTTAAPISTDGTTAVPNKC 1830
>SB_42630| Best HMM Match : Ets (HMM E-Value=0)
Length = 631
Score = 28.7 bits (61), Expect = 2.2
Identities = 33/117 (28%), Positives = 43/117 (36%), Gaps = 12/117 (10%)
Frame = -1
Query: 340 RHPR*DISSKISV*LQRLPHPS-----NRNAFTAHGRNRQC-GGTYPRGLTRGPTTSNYA 179
RH D+S + + R H N N + + C G Y R P NY
Sbjct: 206 RHVHEDVSRHVDAAMSRHAHEEMSRHGNENTVSHSTDDSACTNGLYSRKREHSPVRGNYR 265
Query: 178 NYNFAGFTFITRCYSFTVEVNRKYLLST*FIR------KIGTRLRDSNTGASFNTNA 26
YN A R Y+ + +K LL R + R S+TG S NTNA
Sbjct: 266 EYNDAVLPPKKRSYT---DAYKKALLDLDVTRLKEEAAGMIDRPASSSTGPSSNTNA 319
>SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 977
Score = 28.7 bits (61), Expect = 2.2
Identities = 33/117 (28%), Positives = 43/117 (36%), Gaps = 12/117 (10%)
Frame = -1
Query: 340 RHPR*DISSKISV*LQRLPHPS-----NRNAFTAHGRNRQC-GGTYPRGLTRGPTTSNYA 179
RH D+S + + R H N N + + C G Y R P NY
Sbjct: 552 RHVHEDVSRHVDAAMSRHAHEEMSRHGNENTVSHSTDDSACTNGLYSRKREHSPVRGNYR 611
Query: 178 NYNFAGFTFITRCYSFTVEVNRKYLLST*FIR------KIGTRLRDSNTGASFNTNA 26
YN A R Y+ + +K LL R + R S+TG S NTNA
Sbjct: 612 EYNDAVLPPKKRSYT---DAYKKALLDLDVTRLKEEAAGMIDRPASSSTGPSSNTNA 665
>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3297
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 131 EGITSCNKSETRKIIICVITGGRTSCESARVGTTALPISAVSSKCVSV 274
+G T+ S + +IT G T+ GTTA PIS + V V
Sbjct: 2692 DGTTAAPMSTDGTTAVPMITNGTTAVPMITDGTTAAPISTDGTTAVPV 2739
>SB_42288| Best HMM Match : Transglut_N (HMM E-Value=9.2e-34)
Length = 686
Score = 27.1 bits (57), Expect = 6.8
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +2
Query: 44 CTCVRIP-QAGTNFSNELRTQQIFTIDFH----GEGITSCNKSETRKIIICVITGGR 199
C + IP ++ TNF + T TIDFH G + N S +I V T GR
Sbjct: 343 CRALGIPTRSVTNFKSAHDTDSSMTIDFHFDEAGTSMFGMNLSLRDQIFPLVTTDGR 399
>SB_47985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1681
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -1
Query: 265 AFTAHGRNRQCGGTYPRGLTRGPTTSNYANYN 170
A TAHGR +CG TY + R T+ AN+N
Sbjct: 555 ASTAHGR--ECGLTYEQYSNRSNYTNVCANWN 584
>SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)
Length = 173
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 140 TSCNKSETRKIIICVITGGRTSCESAR 220
T+C+K R IC + GGR C R
Sbjct: 102 TACSKVRCRGNSICKVAGGRARCVPLR 128
>SB_28221| Best HMM Match : eRF1_3 (HMM E-Value=8.7)
Length = 348
Score = 26.6 bits (56), Expect = 8.9
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -2
Query: 312 RSQYSYNGCRTLPTETHLLLTAEIGSAVVPTRADSQEVLP 193
RS Y ++ RTLPT++ L ++G + +P + +++P
Sbjct: 7 RSVYRHSSYRTLPTKSK-SLRMKVGKSNIPRLVPNNKLMP 45
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,060,807
Number of Sequences: 59808
Number of extensions: 311895
Number of successful extensions: 741
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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