Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10846
         (439 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113647-1|AAM29652.1| 1081|Drosophila melanogaster SD10773p pro...    29   3.7  
AE014297-1482|AAF54780.1| 1081|Drosophila melanogaster CG10042-P...    29   3.7  
AE014297-1481|AAF54781.2| 1169|Drosophila melanogaster CG10042-P...    29   3.7  
X68794-1|CAA48691.2| 3004|Drosophila melanogaster type II transm...    27   8.4  

>AY113647-1|AAM29652.1| 1081|Drosophila melanogaster SD10773p
           protein.
          Length = 1081

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +2

Query: 68  AGTNFSNELRTQQ--IFTIDFHGEGITSCNKSETRKIIICVITGGRTSCESARVGTTALP 241
           +G+  SN  R+Q+  I + +  G G+T  +  ETR+         R   +  R G    P
Sbjct: 710 SGSRKSNRQRSQRRPILSDNPAGHGLTEQDVEETRQSFNTPTPDTRIDSKKRRSGAATTP 769

Query: 242 ISAVSS 259
           IS++ S
Sbjct: 770 ISSIDS 775


>AE014297-1482|AAF54780.1| 1081|Drosophila melanogaster CG10042-PA,
           isoform A protein.
          Length = 1081

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +2

Query: 68  AGTNFSNELRTQQ--IFTIDFHGEGITSCNKSETRKIIICVITGGRTSCESARVGTTALP 241
           +G+  SN  R+Q+  I + +  G G+T  +  ETR+         R   +  R G    P
Sbjct: 710 SGSRKSNRQRSQRRPILSDNPAGHGLTEQDVEETRQSFNTPTPDTRIDSKKRRSGAATTP 769

Query: 242 ISAVSS 259
           IS++ S
Sbjct: 770 ISSIDS 775


>AE014297-1481|AAF54781.2| 1169|Drosophila melanogaster CG10042-PB,
           isoform B protein.
          Length = 1169

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +2

Query: 68  AGTNFSNELRTQQ--IFTIDFHGEGITSCNKSETRKIIICVITGGRTSCESARVGTTALP 241
           +G+  SN  R+Q+  I + +  G G+T  +  ETR+         R   +  R G    P
Sbjct: 798 SGSRKSNRQRSQRRPILSDNPAGHGLTEQDVEETRQSFNTPTPDTRIDSKKRRSGAATTP 857

Query: 242 ISAVSS 259
           IS++ S
Sbjct: 858 ISSIDS 863


>X68794-1|CAA48691.2| 3004|Drosophila melanogaster type II
           transmembrane protein protein.
          Length = 3004

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 41  RCTCVRIPQAGTNFSNELRTQQIFTIDFHGEGITSCNKSE 160
           RC C+    AG++ S  L       ID  G+G+T C+ SE
Sbjct: 806 RCDCIE-GWAGSDCSIALELNCKDNIDNDGDGMTDCSDSE 844


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,021,383
Number of Sequences: 53049
Number of extensions: 461050
Number of successful extensions: 932
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1396986582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)