Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10846
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70311-4|CAA94373.1|  541|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AL034365-3|CAA22261.1|  563|Caenorhabditis elegans Hypothetical ...    27   4.5  
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    27   6.0  
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z70311-4|CAA94373.1|  541|Caenorhabditis elegans Hypothetical
           protein T25B9.5 protein.
          Length = 541

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -1

Query: 331 R*DISSKISV*LQRLPHPSNRNAFTAHGRNRQCGGTYPRGLTRGPTTSN 185
           R  ++ K SV  Q++P  S R+ F++  +  +   T P G++  P+T++
Sbjct: 467 RISLNRKKSVDRQKIPSSSKRSFFSSLRKKNKDQVTLPAGMSISPSTNS 515


>AL034365-3|CAA22261.1|  563|Caenorhabditis elegans Hypothetical
           protein Y69E1A.3 protein.
          Length = 563

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -1

Query: 331 R*DISSKISV*LQRLPHPSNRNAFTAHGRNRQCGGTYPRGLTRGPTTSN 185
           R  ++ K SV  Q++P  S R+ F++  +  +   T P G++  P+T++
Sbjct: 489 RISLNRKKSVDRQKIPSSSKRSFFSSLRKKNKDQVTLPAGMSISPSTNS 537


>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
           protein H43E16.1 protein.
          Length = 1203

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +2

Query: 140 TSCNKSETRKIIICVITGGRTSCESARVGTTALPISAVSSKCVSVGRVRQP 292
           T C    T   ++C  T   ++  S  V TT +P++ V +   S+G    P
Sbjct: 333 TDCPVCSTAAPVVC--TTASSAPASTAVVTTTMPVTTVQTTVTSIGTSTSP 381


>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
            F45E4.4 protein.
          Length = 2361

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 261  LLLTAEIGSAVVPTRADSQEVLPPVITQI 175
            ++  AEI SA +P+R+ S   +PP + Q+
Sbjct: 1549 VMAEAEIDSAKIPSRSTSSYSMPPPLPQM 1577


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,091,647
Number of Sequences: 27780
Number of extensions: 229564
Number of successful extensions: 520
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)