Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10846
         (439 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59650.1 68418.m07479 leucine-rich repeat protein kinase, put...    28   3.2  
At4g38640.1 68417.m05469 choline transporter-related contains we...    26   9.7  
At2g37720.1 68415.m04625 expressed protein                             26   9.7  

>At5g59650.1 68418.m07479 leucine-rich repeat protein kinase,
           putative contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 892

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 142 CYSFTVEVNRKYLLST*FI 86
           CYS +V+ NRKYL+   FI
Sbjct: 93  CYSLSVDKNRKYLIRARFI 111


>At4g38640.1 68417.m05469 choline transporter-related contains weak
           similarity to CD92 protein [Homo sapiens]
           gi|16945323|emb|CAC82175
          Length = 556

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 187 NYANYNFAGFTFITRCYS--FTVEVNRKYLLST*FIRKIGTRL 65
           N    NFA  T    C S   T E+ R+ LLS  F+  + TR+
Sbjct: 413 NKFTINFAAITGEAYCTSAKMTYELLRRNLLSAVFVETVSTRI 455


>At2g37720.1 68415.m04625 expressed protein 
          Length = 482

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +2

Query: 77  NFSNELRTQQIFTIDFHGEGITSCNKSETRKIIICVITGGRTSCESARVGT 229
           N  N LR  Q  TI F G+ +      E  + ++C+ TGG+ S E   VG+
Sbjct: 200 NRVNFLRRMQNKTIAFIGDSLGR----EQFQSLMCMATGGKESPEVQNVGS 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,337,172
Number of Sequences: 28952
Number of extensions: 209076
Number of successful extensions: 457
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)