Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10844
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...   116   5e-27
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    27   3.1  
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    26   7.1  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    25   9.4  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    25   9.4  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score =  116 bits (278), Expect = 5e-27
 Identities = 50/85 (58%), Positives = 71/85 (83%)
 Frame = -3

Query: 506 KQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKG 327
           + VTSSRRK RK HF APS +RRVLMS+PLSKELR+++ ++S+P+R+DD++ V+RG  KG
Sbjct: 5   RDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRGSNKG 64

Query: 326 QQVGKVMQVYRKKFVVYIERIQRER 252
           ++ GK+  VYRKKF++ IER+ RE+
Sbjct: 65  RE-GKITSVYRKKFLLLIERVTREK 88



 Score = 42.7 bits (96), Expect = 6e-05
 Identities = 20/37 (54%), Positives = 28/37 (75%)
 Frame = -2

Query: 264 SKRKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRR 154
           ++ KANGA+A VGI  SK VI KL ++KDRK ++ R+
Sbjct: 85  TREKANGASAPVGIDASKVVITKLHLDKDRKDLIVRK 121


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 638 Q*KGSKNISRQFDILHARNSNLNKV 564
           Q KG+ N +  F++ +ARN N+NK+
Sbjct: 177 QNKGNVNDANFFEVEYARNENMNKL 201


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 349 LYVDTTKANRLAK*CRCIVKSLLYTLRGF 263
           LY D  +    A+ C C+V++LLY  R F
Sbjct: 78  LYHDNHERKMSAQSCACMVRTLLYGKRFF 106


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 168 LLCGLYSSST*QSHTLKGECRHMLLHHWPFSLNPL 272
           L CGL        +   G CR + +HH  F +N L
Sbjct: 219 LFCGLLWGDYRGGYFYAGVCRLVFVHHATFCVNSL 253


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 231 VGIHPSKCV-IVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 109
           +GI P K    +K  + KDR A ++RR +G    +G D+  Y
Sbjct: 256 IGIDPEKFSDALKSDVVKDRIASIERRLQGVKVIVGVDRLDY 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,178,498
Number of Sequences: 5004
Number of extensions: 70164
Number of successful extensions: 204
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)