Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10844
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0263 + 2136858-2137331                                          124   8e-29
12_01_0323 - 2459854-2460306                                          124   1e-28
11_01_0317 - 2365493-2365786,2365825-2365953                           87   2e-17
03_04_0054 + 16883678-16883719,16884667-16884723,16884852-168849...    30   1.8  
08_01_0391 + 3443989-3444219                                           29   4.2  

>01_01_0263 + 2136858-2137331
          Length = 157

 Score =  124 bits (299), Expect = 8e-29
 Identities = 58/84 (69%), Positives = 75/84 (89%)
 Frame = -3

Query: 503 QVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQ 324
           +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG YKG+
Sbjct: 6   RVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRGSYKGR 65

Query: 323 QVGKVMQVYRKKFVVYIERIQRER 252
           + GKV+QVYR+++V+++ERI RE+
Sbjct: 66  E-GKVVQVYRRRWVIHVERITREK 88



 Score = 68.1 bits (159), Expect = 7e-12
 Identities = 32/52 (61%), Positives = 41/52 (78%)
 Frame = -2

Query: 264 SKRKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 109
           ++ K NG+T  VGIHPSK V+ KLK++KDRKAILDR+A+GR  A  K KGK+
Sbjct: 85  TREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKARGR--AADKAKGKF 134


>12_01_0323 - 2459854-2460306
          Length = 150

 Score =  124 bits (298), Expect = 1e-28
 Identities = 58/84 (69%), Positives = 75/84 (89%)
 Frame = -3

Query: 503 QVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQ 324
           +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG YKG+
Sbjct: 6   RVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRGSYKGR 65

Query: 323 QVGKVMQVYRKKFVVYIERIQRER 252
           + GKV+QVYR+++V+++ERI RE+
Sbjct: 66  E-GKVVQVYRRRWVIHVERITREK 88



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 32/52 (61%), Positives = 40/52 (76%)
 Frame = -2

Query: 264 SKRKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 109
           ++ K NG+T  VGIHPSK V+ KLK++KDRKAILDR+A GR  A  K KGK+
Sbjct: 85  TREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGR--AADKAKGKF 134


>11_01_0317 - 2365493-2365786,2365825-2365953
          Length = 140

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 47/84 (55%), Positives = 62/84 (73%)
 Frame = -3

Query: 503 QVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQ 324
           +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+N             VVRG YKG+
Sbjct: 6   RVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYN-------------VVRGSYKGR 52

Query: 323 QVGKVMQVYRKKFVVYIERIQRER 252
           + GKV+QVYR+++V+++ERI RE+
Sbjct: 53  E-GKVVQVYRRRWVIHVERITREK 75



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 32/52 (61%), Positives = 40/52 (76%)
 Frame = -2

Query: 264 SKRKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 109
           ++ K NG+T  VGIHPSK V+ KLK++KDRKAILDR+A GR  A  K KGK+
Sbjct: 72  TREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGR--AADKAKGKF 121


>03_04_0054 +
           16883678-16883719,16884667-16884723,16884852-16884959,
           16885028-16885102,16885744-16885833,16885950-16886057,
           16886137-16886211,16886371-16886433,16886531-16886924,
           16888539-16888651,16888799-16888829,16888987-16889864
          Length = 677

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -3

Query: 617 ISRQFDILHARNSNLNKVL*INVVFLR--CSEERQNEVHKQVTSSRRKNRKRHFSAPSHI 444
           + R FDI+ ++ +   +++ I + FL+  CS     +  K+    RRKN   H S    +
Sbjct: 146 LCRSFDIIGSKANRKEELVIIMMEFLKEHCSGTDATDPDKKTKKRRRKNEVTHLSGSKPL 205

Query: 443 RRV 435
           +++
Sbjct: 206 KKM 208


>08_01_0391 + 3443989-3444219
          Length = 76

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 220 VNADICCCTIGLSL*ILSMYTTNFLRYTCITLPTCWPL 333
           ++AD+CCC+  L + I +    + L + C+ L TC+ L
Sbjct: 41  MDADLCCCSCAL-IGIAATVAASLLAFKCL-LTTCYKL 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,753,613
Number of Sequences: 37544
Number of extensions: 426010
Number of successful extensions: 972
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)