BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV10844 (790 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_01_0263 + 2136858-2137331 124 8e-29 12_01_0323 - 2459854-2460306 124 1e-28 11_01_0317 - 2365493-2365786,2365825-2365953 87 2e-17 03_04_0054 + 16883678-16883719,16884667-16884723,16884852-168849... 30 1.8 08_01_0391 + 3443989-3444219 29 4.2 >01_01_0263 + 2136858-2137331 Length = 157 Score = 124 bits (299), Expect = 8e-29 Identities = 58/84 (69%), Positives = 75/84 (89%) Frame = -3 Query: 503 QVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQ 324 +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG YKG+ Sbjct: 6 RVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRGSYKGR 65 Query: 323 QVGKVMQVYRKKFVVYIERIQRER 252 + GKV+QVYR+++V+++ERI RE+ Sbjct: 66 E-GKVVQVYRRRWVIHVERITREK 88 Score = 68.1 bits (159), Expect = 7e-12 Identities = 32/52 (61%), Positives = 41/52 (78%) Frame = -2 Query: 264 SKRKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 109 ++ K NG+T VGIHPSK V+ KLK++KDRKAILDR+A+GR A K KGK+ Sbjct: 85 TREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKARGR--AADKAKGKF 134 >12_01_0323 - 2459854-2460306 Length = 150 Score = 124 bits (298), Expect = 1e-28 Identities = 58/84 (69%), Positives = 75/84 (89%) Frame = -3 Query: 503 QVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQ 324 +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG YKG+ Sbjct: 6 RVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRGSYKGR 65 Query: 323 QVGKVMQVYRKKFVVYIERIQRER 252 + GKV+QVYR+++V+++ERI RE+ Sbjct: 66 E-GKVVQVYRRRWVIHVERITREK 88 Score = 67.3 bits (157), Expect = 1e-11 Identities = 32/52 (61%), Positives = 40/52 (76%) Frame = -2 Query: 264 SKRKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 109 ++ K NG+T VGIHPSK V+ KLK++KDRKAILDR+A GR A K KGK+ Sbjct: 85 TREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGR--AADKAKGKF 134 >11_01_0317 - 2365493-2365786,2365825-2365953 Length = 140 Score = 86.6 bits (205), Expect = 2e-17 Identities = 47/84 (55%), Positives = 62/84 (73%) Frame = -3 Query: 503 QVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQ 324 +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+N VVRG YKG+ Sbjct: 6 RVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYN-------------VVRGSYKGR 52 Query: 323 QVGKVMQVYRKKFVVYIERIQRER 252 + GKV+QVYR+++V+++ERI RE+ Sbjct: 53 E-GKVVQVYRRRWVIHVERITREK 75 Score = 67.3 bits (157), Expect = 1e-11 Identities = 32/52 (61%), Positives = 40/52 (76%) Frame = -2 Query: 264 SKRKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 109 ++ K NG+T VGIHPSK V+ KLK++KDRKAILDR+A GR A K KGK+ Sbjct: 72 TREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGR--AADKAKGKF 121 >03_04_0054 + 16883678-16883719,16884667-16884723,16884852-16884959, 16885028-16885102,16885744-16885833,16885950-16886057, 16886137-16886211,16886371-16886433,16886531-16886924, 16888539-16888651,16888799-16888829,16888987-16889864 Length = 677 Score = 30.3 bits (65), Expect = 1.8 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Frame = -3 Query: 617 ISRQFDILHARNSNLNKVL*INVVFLR--CSEERQNEVHKQVTSSRRKNRKRHFSAPSHI 444 + R FDI+ ++ + +++ I + FL+ CS + K+ RRKN H S + Sbjct: 146 LCRSFDIIGSKANRKEELVIIMMEFLKEHCSGTDATDPDKKTKKRRRKNEVTHLSGSKPL 205 Query: 443 RRV 435 +++ Sbjct: 206 KKM 208 >08_01_0391 + 3443989-3444219 Length = 76 Score = 29.1 bits (62), Expect = 4.2 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = +1 Query: 220 VNADICCCTIGLSL*ILSMYTTNFLRYTCITLPTCWPL 333 ++AD+CCC+ L + I + + L + C+ L TC+ L Sbjct: 41 MDADLCCCSCAL-IGIAATVAASLLAFKCL-LTTCYKL 76 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,753,613 Number of Sequences: 37544 Number of extensions: 426010 Number of successful extensions: 972 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 947 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 969 length of database: 14,793,348 effective HSP length: 81 effective length of database: 11,752,284 effective search space used: 2127163404 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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