BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV10844 (790 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.) 141 5e-34 SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.61 SB_24447| Best HMM Match : TolA (HMM E-Value=1.3) 30 2.5 SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 3.2 SB_27336| Best HMM Match : zf-U1 (HMM E-Value=2) 29 3.2 SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7) 29 4.3 SB_16484| Best HMM Match : MSG (HMM E-Value=0.24) 29 4.3 SB_2039| Best HMM Match : DUF164 (HMM E-Value=1.2) 29 5.7 SB_7893| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08) 28 7.5 SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07) 28 9.9 >SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 144 Score = 141 bits (342), Expect = 5e-34 Identities = 63/86 (73%), Positives = 80/86 (93%) Frame = -3 Query: 509 HKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYK 330 + +V+SSRRK+RK HFSAPS +RR LMS+PLSKELRQK+NV+S+P+RKDDEVQV RGH+K Sbjct: 4 NSEVSSSRRKSRKAHFSAPSSVRRKLMSAPLSKELRQKYNVRSIPVRKDDEVQVTRGHFK 63 Query: 329 GQQVGKVMQVYRKKFVVYIERIQRER 252 QQVGKV+QVYRKK+V++I+RIQRE+ Sbjct: 64 SQQVGKVIQVYRKKWVIHIDRIQREK 89 Score = 63.7 bits (148), Expect = 2e-10 Identities = 30/46 (65%), Positives = 36/46 (78%) Frame = -2 Query: 261 KRKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGK 124 + KANGAT VGIHPSK IVKLK++KDRK ILDR+ + +LA GK Sbjct: 87 REKANGATVSVGIHPSKVEIVKLKIDKDRKKILDRKNRSKLAEKGK 132 >SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 136 Score = 31.9 bits (69), Expect = 0.61 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Frame = -3 Query: 515 EVHKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMP--IRK 366 + H Q+ RK+ K H P HIR+ S + K +R+ N + P IRK Sbjct: 2 KTHSQIQKHTRKS-KTHSQIPKHIRKSKTHSQIQKHIRKSKNTLANPKHIRK 52 >SB_24447| Best HMM Match : TolA (HMM E-Value=1.3) Length = 325 Score = 29.9 bits (64), Expect = 2.5 Identities = 19/105 (18%), Positives = 52/105 (49%), Gaps = 1/105 (0%) Frame = -3 Query: 434 LMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQRE 255 L + + +E+ +K K++ K +++++ +++ K Q +KK+ I++ ++E Sbjct: 151 LAEAKIKQEVSKKSKEKALEENKAEKIELESQKKDQEKLAKEFQKNKKKYAAEIDKKEKE 210 Query: 254 RPMVQQHMSAFTLQSV*LSS*R-*IKTAKQSSIAEQRADWLHLAK 123 R + + + ++ ++ + +KT +SS + + D AK Sbjct: 211 RKEIDKQIKKIIADAIAEANKKNAVKTGTKSSGSSSKFDLTPEAK 255 >SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0) Length = 4248 Score = 29.5 bits (63), Expect = 3.2 Identities = 16/55 (29%), Positives = 24/55 (43%) Frame = -1 Query: 247 WCNSICRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRGNCHSHG 83 W N IC ++C C+V DE N + ++ G TW R +R + G Sbjct: 525 WHNRICMR--VEICGCKVCDEPLGMENSKIKANDIEGHTWTRNREPYRARLNYRG 577 >SB_27336| Best HMM Match : zf-U1 (HMM E-Value=2) Length = 206 Score = 29.5 bits (63), Expect = 3.2 Identities = 21/102 (20%), Positives = 46/102 (45%) Frame = -3 Query: 515 EVHKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGH 336 E K+ S ++ + K+H ++ H+R + L K+ N+K + + K +Q Sbjct: 40 EACKETLSKKKSSLKKHVTSQKHLR---AKATLEKDKANDQNIKKL-LSKHSTIQGSTLP 95 Query: 335 YKGQQVGKVMQVYRKKFVVYIERIQRERPMVQQHMSAFTLQS 210 K + + K V+Y+ ++ RP ++++ T +S Sbjct: 96 EKMRLYRYELVEIMLKAVIYLAKVDVLRPFLEKYGHRLTTRS 137 >SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7) Length = 828 Score = 29.1 bits (62), Expect = 4.3 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%) Frame = +3 Query: 156 CDRGLLCGLYSSST*QSHTLKGE-CRHMLLHHWP--FSLNPL 272 C G + + ST + L+G+ CR M+L HWP FSL+ L Sbjct: 325 CKNGKVPVVSGGSTYDTWPLQGDFCRTMMLLHWPNWFSLDEL 366 >SB_16484| Best HMM Match : MSG (HMM E-Value=0.24) Length = 661 Score = 29.1 bits (62), Expect = 4.3 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +1 Query: 73 LRGLHGCGSFLGVFTLVFAKCSQS 144 L GLH CG + VFAKC Q+ Sbjct: 72 LVGLHPCGDLVPTMLKVFAKCDQA 95 >SB_2039| Best HMM Match : DUF164 (HMM E-Value=1.2) Length = 248 Score = 28.7 bits (61), Expect = 5.7 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = -3 Query: 524 RQNEVHKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELR 402 R+++ H Q+ RK+ K H HIR+ S + K++R Sbjct: 141 RKSKTHSQIPKHIRKS-KTHLQIQKHIRKSKTHSQIQKQIR 180 >SB_7893| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08) Length = 391 Score = 28.3 bits (60), Expect = 7.5 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Frame = -3 Query: 551 VVFLRCSEERQNEVHKQV---TSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKS 381 ++ CSEE +NE+ V + +RK ++ ++ PS +R+ + L + F+ S Sbjct: 311 ILLASCSEEYKNEMMLMVCPFSWYQRKQHQKKYTLPSSSKRISPADVTPSNLYRTFSNDS 370 Query: 380 MPIRK 366 +R+ Sbjct: 371 FQLRE 375 >SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07) Length = 1188 Score = 27.9 bits (59), Expect = 9.9 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Frame = +2 Query: 185 FIFN-LTITHFEG*MPTYAVAPLAFLFESSQCIQQTFYDTPASLCQPVGLCSVHV 346 F FN L HF + T V + S C+Q+ Y P L PV L V + Sbjct: 247 FTFNHLAFPHFLAQIFTSVVGYILGWLACSMCLQKIAYALPLILATPVSLALVFI 301 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 24,044,361 Number of Sequences: 59808 Number of extensions: 539011 Number of successful extensions: 1413 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 1293 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1412 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2167838629 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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