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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10844
         (790 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)             141   5e-34
SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.61 
SB_24447| Best HMM Match : TolA (HMM E-Value=1.3)                      30   2.5  
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   3.2  
SB_27336| Best HMM Match : zf-U1 (HMM E-Value=2)                       29   3.2  
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)           29   4.3  
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)                      29   4.3  
SB_2039| Best HMM Match : DUF164 (HMM E-Value=1.2)                     29   5.7  
SB_7893| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08)                  28   7.5  
SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)        28   9.9  

>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score =  141 bits (342), Expect = 5e-34
 Identities = 63/86 (73%), Positives = 80/86 (93%)
 Frame = -3

Query: 509 HKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYK 330
           + +V+SSRRK+RK HFSAPS +RR LMS+PLSKELRQK+NV+S+P+RKDDEVQV RGH+K
Sbjct: 4   NSEVSSSRRKSRKAHFSAPSSVRRKLMSAPLSKELRQKYNVRSIPVRKDDEVQVTRGHFK 63

Query: 329 GQQVGKVMQVYRKKFVVYIERIQRER 252
            QQVGKV+QVYRKK+V++I+RIQRE+
Sbjct: 64  SQQVGKVIQVYRKKWVIHIDRIQREK 89



 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 30/46 (65%), Positives = 36/46 (78%)
 Frame = -2

Query: 261 KRKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGK 124
           + KANGAT  VGIHPSK  IVKLK++KDRK ILDR+ + +LA  GK
Sbjct: 87  REKANGATVSVGIHPSKVEIVKLKIDKDRKKILDRKNRSKLAEKGK 132


>SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -3

Query: 515 EVHKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMP--IRK 366
           + H Q+    RK+ K H   P HIR+    S + K +R+  N  + P  IRK
Sbjct: 2   KTHSQIQKHTRKS-KTHSQIPKHIRKSKTHSQIQKHIRKSKNTLANPKHIRK 52


>SB_24447| Best HMM Match : TolA (HMM E-Value=1.3)
          Length = 325

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/105 (18%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
 Frame = -3

Query: 434 LMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQRE 255
           L  + + +E+ +K   K++   K +++++       +++ K  Q  +KK+   I++ ++E
Sbjct: 151 LAEAKIKQEVSKKSKEKALEENKAEKIELESQKKDQEKLAKEFQKNKKKYAAEIDKKEKE 210

Query: 254 RPMVQQHMSAFTLQSV*LSS*R-*IKTAKQSSIAEQRADWLHLAK 123
           R  + + +      ++  ++ +  +KT  +SS +  + D    AK
Sbjct: 211 RKEIDKQIKKIIADAIAEANKKNAVKTGTKSSGSSSKFDLTPEAK 255


>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4248

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -1

Query: 247 WCNSICRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRGNCHSHG 83
           W N IC     ++C C+V DE     N + ++    G TW R    +R   +  G
Sbjct: 525 WHNRICMR--VEICGCKVCDEPLGMENSKIKANDIEGHTWTRNREPYRARLNYRG 577


>SB_27336| Best HMM Match : zf-U1 (HMM E-Value=2)
          Length = 206

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 21/102 (20%), Positives = 46/102 (45%)
 Frame = -3

Query: 515 EVHKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGH 336
           E  K+  S ++ + K+H ++  H+R     + L K+     N+K + + K   +Q     
Sbjct: 40  EACKETLSKKKSSLKKHVTSQKHLR---AKATLEKDKANDQNIKKL-LSKHSTIQGSTLP 95

Query: 335 YKGQQVGKVMQVYRKKFVVYIERIQRERPMVQQHMSAFTLQS 210
            K +     +     K V+Y+ ++   RP ++++    T +S
Sbjct: 96  EKMRLYRYELVEIMLKAVIYLAKVDVLRPFLEKYGHRLTTRS 137


>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
          Length = 828

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +3

Query: 156 CDRGLLCGLYSSST*QSHTLKGE-CRHMLLHHWP--FSLNPL 272
           C  G +  +   ST  +  L+G+ CR M+L HWP  FSL+ L
Sbjct: 325 CKNGKVPVVSGGSTYDTWPLQGDFCRTMMLLHWPNWFSLDEL 366


>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
          Length = 661

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 73  LRGLHGCGSFLGVFTLVFAKCSQS 144
           L GLH CG  +     VFAKC Q+
Sbjct: 72  LVGLHPCGDLVPTMLKVFAKCDQA 95


>SB_2039| Best HMM Match : DUF164 (HMM E-Value=1.2)
          Length = 248

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 524 RQNEVHKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELR 402
           R+++ H Q+    RK+ K H     HIR+    S + K++R
Sbjct: 141 RKSKTHSQIPKHIRKS-KTHLQIQKHIRKSKTHSQIQKQIR 180


>SB_7893| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08)
          Length = 391

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = -3

Query: 551 VVFLRCSEERQNEVHKQV---TSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKS 381
           ++   CSEE +NE+   V   +  +RK  ++ ++ PS  +R+  +      L + F+  S
Sbjct: 311 ILLASCSEEYKNEMMLMVCPFSWYQRKQHQKKYTLPSSSKRISPADVTPSNLYRTFSNDS 370

Query: 380 MPIRK 366
             +R+
Sbjct: 371 FQLRE 375


>SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)
          Length = 1188

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +2

Query: 185 FIFN-LTITHFEG*MPTYAVAPLAFLFESSQCIQQTFYDTPASLCQPVGLCSVHV 346
           F FN L   HF   + T  V  +      S C+Q+  Y  P  L  PV L  V +
Sbjct: 247 FTFNHLAFPHFLAQIFTSVVGYILGWLACSMCLQKIAYALPLILATPVSLALVFI 301


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,044,361
Number of Sequences: 59808
Number of extensions: 539011
Number of successful extensions: 1413
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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