Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10844
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical p...   102   3e-22
Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical pr...   102   3e-22
Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical pr...   102   3e-22
Z92817-3|CAJ43914.1|  511|Caenorhabditis elegans Hypothetical pr...    32   0.54 
Z92817-2|CAJ43913.1|  510|Caenorhabditis elegans Hypothetical pr...    32   0.54 
Z71262-11|CAE17793.1|  127|Caenorhabditis elegans Hypothetical p...    28   6.6  
AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormo...    28   6.6  
U23521-5|AAC46813.2|  250|Caenorhabditis elegans Hypothetical pr...    28   8.8  
AL031637-1|CAA21047.2|  317|Caenorhabditis elegans Hypothetical ...    28   8.8  

>Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical
           protein F28C6.7c protein.
          Length = 109

 Score =  102 bits (244), Expect = 3e-22
 Identities = 47/88 (53%), Positives = 69/88 (78%)
 Frame = -3

Query: 515 EVHKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGH 336
           +V+  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG 
Sbjct: 2   KVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRGR 61

Query: 335 YKGQQVGKVMQVYRKKFVVYIERIQRER 252
           +KG   G+V++ YRKKFV++I++I RE+
Sbjct: 62  HKG-NTGRVLRCYRKKFVIHIDKITREK 88



 Score = 31.9 bits (69), Expect = 0.54
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = -2

Query: 264 SKRKANGATAYVGIHPSK 211
           ++ KANG+T ++GIHPSK
Sbjct: 85  TREKANGSTVHIGIHPSK 102


>Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical
           protein F28C6.7b protein.
          Length = 106

 Score =  102 bits (244), Expect = 3e-22
 Identities = 47/88 (53%), Positives = 69/88 (78%)
 Frame = -3

Query: 515 EVHKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGH 336
           +V+  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG 
Sbjct: 2   KVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRGR 61

Query: 335 YKGQQVGKVMQVYRKKFVVYIERIQRER 252
           +KG   G+V++ YRKKFV++I++I RE+
Sbjct: 62  HKG-NTGRVLRCYRKKFVIHIDKITREK 88



 Score = 31.9 bits (69), Expect = 0.54
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = -2

Query: 264 SKRKANGATAYVGIHPSK 211
           ++ KANG+T ++GIHPSK
Sbjct: 85  TREKANGSTVHIGIHPSK 102


>Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical
           protein F28C6.7a protein.
          Length = 142

 Score =  102 bits (244), Expect = 3e-22
 Identities = 47/88 (53%), Positives = 69/88 (78%)
 Frame = -3

Query: 515 EVHKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGH 336
           +V+  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG 
Sbjct: 2   KVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRGR 61

Query: 335 YKGQQVGKVMQVYRKKFVVYIERIQRER 252
           +KG   G+V++ YRKKFV++I++I RE+
Sbjct: 62  HKG-NTGRVLRCYRKKFVIHIDKITREK 88



 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 27/52 (51%), Positives = 40/52 (76%)
 Frame = -2

Query: 264 SKRKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 109
           ++ KANG+T ++GIHPSK  I KLK++KDR+A+++R+A GR    G  KGK+
Sbjct: 85  TREKANGSTVHIGIHPSKVAITKLKLDKDRRALVERKAAGRSRVTGILKGKH 136


>Z92817-3|CAJ43914.1|  511|Caenorhabditis elegans Hypothetical
           protein W08G11.3b protein.
          Length = 511

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
 Frame = -3

Query: 626 SKNISRQFDILHARNSNLNKVL*INVVFLRCSEERQNEVHKQVTSSRRKNRKRHFS---- 459
           S+ + +Q + L+ RN+ L K     VV     +  + E  ++     + N K+  +    
Sbjct: 181 SEIVRQQINALNERNAAL-KTKCETVVAQNRQQHEEMEARQKFVQGAQLNVKKAEADLQL 239

Query: 458 APSHIRRVLMSSPLSKELRQ-----KFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYR 294
           A + I+R+L     S++L       K N++   IRK+DE+++   +YK   + K      
Sbjct: 240 ANAEIQRLLRELDSSQQLENSSITDKRNIEEELIRKEDEIRL--ANYKSATLLKAANDKI 297

Query: 293 KKFVVYIERIQRERPMVQQHMSAFTL 216
           +K  +   R+++E+P V   M+  T+
Sbjct: 298 EKLEL---RLKQEKPAVHNEMTVETI 320


>Z92817-2|CAJ43913.1|  510|Caenorhabditis elegans Hypothetical
           protein W08G11.3a protein.
          Length = 510

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
 Frame = -3

Query: 626 SKNISRQFDILHARNSNLNKVL*INVVFLRCSEERQNEVHKQVTSSRRKNRKRHFS---- 459
           S+ + +Q + L+ RN+ L K     VV     +  + E  ++     + N K+  +    
Sbjct: 180 SEIVRQQINALNERNAAL-KTKCETVVAQNRQQHEEMEARQKFVQGAQLNVKKAEADLQL 238

Query: 458 APSHIRRVLMSSPLSKELRQ-----KFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYR 294
           A + I+R+L     S++L       K N++   IRK+DE+++   +YK   + K      
Sbjct: 239 ANAEIQRLLRELDSSQQLENSSITDKRNIEEELIRKEDEIRL--ANYKSATLLKAANDKI 296

Query: 293 KKFVVYIERIQRERPMVQQHMSAFTL 216
           +K  +   R+++E+P V   M+  T+
Sbjct: 297 EKLEL---RLKQEKPAVHNEMTVETI 319


>Z71262-11|CAE17793.1|  127|Caenorhabditis elegans Hypothetical
           protein F22D6.15 protein.
          Length = 127

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 734 ILLQICFNVIIFLISNITQYSILLNNG 654
           ++L ICFNV++F++S  +  +IL   G
Sbjct: 5   VVLTICFNVLVFIVSAQSTETILAKLG 31


>AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 119 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 39  FKNFIYLKNYLFKRPPWLWQFPRCI 113
           F NF++LKN+L  +     +F +CI
Sbjct: 79  FSNFLFLKNFLIPKTSRFCRFKKCI 103


>U23521-5|AAC46813.2|  250|Caenorhabditis elegans Hypothetical
           protein F41C3.6 protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +3

Query: 249 WPFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFIVFANRHGFYIEF 398
           W    N     ++LFT +L+H   LL     TY+  F++  N    ++ F
Sbjct: 196 WKLKPNGRKYRDQLFTTYLNHCTKLLL----TYSQKFVILTNSEVHFVVF 241


>AL031637-1|CAA21047.2|  317|Caenorhabditis elegans Hypothetical
           protein Y47H9B.2 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +3

Query: 75  KRPPWLWQFPRCIYPCLCQVQPVC 146
           ++ PW ++    +YP LC++  +C
Sbjct: 249 RKYPWYYKMSSAMYPALCELAGIC 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,858,324
Number of Sequences: 27780
Number of extensions: 412804
Number of successful extensions: 1038
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)