Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10844
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    25   0.61 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   2.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   4.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   7.5  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   9.9  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
 Frame = -3

Query: 632 KGSKNISRQFDILHARNSNLNKVL*INVVFLRCSEERQNEVHKQVTSSRR-KNRKRHFSA 456
           +GSK I  + +I +   + +NK+   + V +   E+ +NE  K  TSS   +NR   F  
Sbjct: 157 EGSKPIFEREEIKNVL-TKINKIKEHDTVLVVNIEKSENESKKYATSSNSLRNRTHGFQH 215

Query: 455 PS--HIRRVLMSSPLSKELRQK 396
            S  + R    S   ++E R+K
Sbjct: 216 TSSRYSRERSCSRDRNREYRKK 237


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 225 IHPSKCVIVKLKMNKDRKAILD 160
           +HPS+C   K+   +  K +LD
Sbjct: 16  LHPSRCTQGKVNYREKEKEVLD 37


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 225 IHPSKCVIVKLKMNKDRKAILD 160
           +HPS+C   K+   +  K +LD
Sbjct: 16  LHPSRCTQGKVNYREKEKEVLD 37


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 207 HTLKGECRHMLLHHWPFSLNP 269
           HT + +C H LL H P   +P
Sbjct: 330 HTPEPDCIHELLGHMPLLADP 350


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +3

Query: 213 LKGECRHMLLHHWPF---SLNPLNVYNKLF 293
           L  +CR+  +   P    S+NP+NVY K +
Sbjct: 17  LTNDCRYDKMTRPPGEINSINPINVYTKAY 46


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -1

Query: 244 CNSICRHSPFKVCDCQV 194
           C ++C    F  CDC++
Sbjct: 743 CFALCHCCDFDACDCEM 759


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 345 YNLNFIVFANRHGFYI 392
           YN +FI++++   FYI
Sbjct: 339 YNTDFIIYSSLSSFYI 354


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = -3

Query: 332 KGQQVGKVMQVYRKKFVVYIERIQRERP 249
           +G +V K+ ++Y +    Y++  +R  P
Sbjct: 493 EGWKVEKIQEIYLEALRAYVDNRRRPNP 520


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 480 KQEEAFQCSFTYKASVDVLS 421
           K  + FQC   YK   D+L+
Sbjct: 115 KISKIFQCFMKYKTITDILN 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,707
Number of Sequences: 438
Number of extensions: 4668
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)