Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10844
         (790 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)           132   2e-31
At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S ...   128   3e-30
At2g16210.2 68415.m01858 transcriptional factor B3 family protei...    31   1.2  
At2g16210.1 68415.m01857 transcriptional factor B3 family protei...    31   1.2  
At3g04690.1 68416.m00503 protein kinase family protein contains ...    29   4.6  
At3g04670.1 68416.m00500 WRKY family transcription factor simila...    28   6.1  
At1g28070.1 68414.m03436 expressed protein ; expression supporte...    28   6.1  
At4g02110.1 68417.m00282 BRCT domain-containing protein contains...    28   8.1  
At1g23670.2 68414.m02987 expressed protein contains Pfam profile...    28   8.1  

>At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)
          Length = 146

 Score =  132 bits (320), Expect = 2e-31
 Identities = 63/84 (75%), Positives = 77/84 (91%)
 Frame = -3

Query: 503 QVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQ 324
           +V+SSRRKNRK HF+APS +RRVLMSSPLSK+LR K NV+SMPIRKDDEVQVVRG +KG+
Sbjct: 6   RVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRGTFKGR 65

Query: 323 QVGKVMQVYRKKFVVYIERIQRER 252
           + GKVMQVYR+K+V++IERI RE+
Sbjct: 66  E-GKVMQVYRRKWVIHIERITREK 88



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 24/50 (48%), Positives = 38/50 (76%)
 Frame = -2

Query: 264 SKRKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKG 115
           ++ K NG+T  VG++ S  +I KL+++KDRK++L+R+A GR AA  K+KG
Sbjct: 85  TREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLERKANGR-AAADKEKG 133


>At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S
           RIBOSOMAL PROTEIN L26, Brassica rapa, EMBL:BRD495
          Length = 146

 Score =  128 bits (310), Expect = 3e-30
 Identities = 61/84 (72%), Positives = 76/84 (90%)
 Frame = -3

Query: 503 QVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQ 324
           +VTSSRRKNRK HF+A S  RRV+MSSPLS +LRQK+NV+SMPIRKDDEVQ+VRG YKG+
Sbjct: 6   RVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRGTYKGR 65

Query: 323 QVGKVMQVYRKKFVVYIERIQRER 252
           + GKV+QVYR+K+V++IERI RE+
Sbjct: 66  E-GKVVQVYRRKWVIHIERITREK 88



 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 29/50 (58%), Positives = 39/50 (78%)
 Frame = -2

Query: 264 SKRKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKG 115
           ++ K NG T  VGI PSK VI KL+++KDRK++L+R+AKGR AA  K+KG
Sbjct: 85  TREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLERKAKGR-AAADKEKG 133


>At2g16210.2 68415.m01858 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 217

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 554 NVVFLRCSEERQNEVHKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELR 402
           N  +LRC EER+NE   +V  S   + +   + P    R      LS++++
Sbjct: 4   NAGYLRCKEERKNESFFKVVQSINVSSENKRALPHDFSRSFTDKELSRKMK 54


>At2g16210.1 68415.m01857 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 291

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 554 NVVFLRCSEERQNEVHKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELR 402
           N  +LRC EER+NE   +V  S   + +   + P    R      LS++++
Sbjct: 4   NAGYLRCKEERKNESFFKVVQSINVSSENKRALPHDFSRSFTDKELSRKMK 54


>At3g04690.1 68416.m00503 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 850

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 213 LKGECRHML-LHHWPFSLNPLNVYNKLFTIHLHHFANLLAF 332
           +KG+ RH+L L+ +P +   LN+ N  FT+  +    L  F
Sbjct: 93  IKGDKRHLLRLYFYPSTYTGLNISNSYFTVEANDVTLLSNF 133


>At3g04670.1 68416.m00500 WRKY family transcription factor similar
           to elicitor response element binding protein WRKY3
           isolog GB:AAB63078 [Arabidopsis thaliana]
          Length = 330

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 394 NFCLSSLDRGEDI-NTRLICEGALKC 468
           +F L+ L RG D  +TR +C G+LKC
Sbjct: 203 SFHLTGLSRGSDQQHTRKMCSGSLKC 228


>At1g28070.1 68414.m03436 expressed protein ; expression supported
           by MPSS
          Length = 176

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -3

Query: 494 SSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVG 315
           S R      HFS PSH+ + L     + E+  +     M +++D    + RG+Y  Q  G
Sbjct: 38  SDRFLELSSHFSVPSHLEQCL--DLKTGEIYYRSWNSGMRVKEDPRKSMSRGNYADQSSG 95

Query: 314 K 312
           +
Sbjct: 96  E 96


>At4g02110.1 68417.m00282 BRCT domain-containing protein contains
           Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
          Length = 1293

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/58 (22%), Positives = 33/58 (56%)
 Frame = -3

Query: 530 EERQNEVHKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDE 357
           E+  +++    ++S  ++ +RH S  ++ R+ L  SP +  L ++ + ++  +R DD+
Sbjct: 264 EQGMSKMETDGSTSINRSIRRHSSLATYSRKTLQRSPETDTLGKESSGQNRSLRMDDK 321


>At1g23670.2 68414.m02987 expressed protein contains Pfam profile
           PF02713: Domain of unknown function DUF220
          Length = 264

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 694 IKKIITLKHI*SKIYADLTTEHKFVSFTKSA 786
           +KK  TL+H+ SK+++DL    K V   K+A
Sbjct: 105 MKKRQTLEHVSSKVFSDLGPTEKHVRVEKAA 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,433,273
Number of Sequences: 28952
Number of extensions: 363137
Number of successful extensions: 867
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)