Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10840
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    30   0.42 
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    25   9.0  
SPBC8D2.12c |||mitochondrial DNA binding protein |Schizosaccharo...    25   9.0  

>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +1

Query: 31  ENWNRINQLQKRKKVTNNDEIAGQMPVIKRRKITEQQVQRPESKGPLVL--FPSDSEDDE 204
           EN N  + +Q  K+  + +E     P++    IT+   +  ESK  +++  F  D EDDE
Sbjct: 382 ENLNSDSDIQN-KRTKSIEENNSLPPIVSTNGITDGDTEMQESKKNVIINGFNEDDEDDE 440


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 144 YLLFGDFTSFDDRHLSSYFIIVRYLLTFL*LINPVPV 34
           YL F    +  +R++  YF+  +  +    L NPVP+
Sbjct: 430 YLSFESLGNLKERYVRQYFLSNKKRIAIYELDNPVPI 466


>SPBC8D2.12c |||mitochondrial DNA binding protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 303 NSPPEERDTIDKGDIVQD-LSVGDW*LIDNPK 395
           N PPE+RD++   D++ D +  G   +++ PK
Sbjct: 170 NLPPEKRDSMKFEDVLDDAIEAGAEDIVNRPK 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,512
Number of Sequences: 5004
Number of extensions: 55776
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)