Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10840
(766 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0590 + 26457514-26457801,26458849-26459325,26459817-264600... 30 2.3
04_01_0175 - 1972361-1972429,1973185-1973334,1974956-1975105,197... 30 2.3
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011... 29 4.1
03_06_0522 - 34494989-34495045,34495171-34495234,34495378-344954... 29 4.1
09_02_0417 - 8915604-8916779,8916863-8917270 28 7.1
07_03_0460 + 18425464-18427473 28 7.1
06_03_0339 - 19687749-19690805 28 7.1
02_01_0526 - 3830705-3830932,3831684-3831748,3831958-3832104,383... 28 9.4
>04_04_0590 +
26457514-26457801,26458849-26459325,26459817-26460027,
26460219-26460376,26460461-26460531,26460707-26460812,
26460880-26460966,26461591-26462148,26462245-26462308,
26463352-26463485,26463568-26463621,26464321-26464417,
26465620-26465825,26465901-26465984,26466265-26466330,
26466883-26466956,26467664-26467751,26467830-26467928
Length = 973
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 574 LEADRGPMEF*GPPTKRLPCTLTPDVRSGSKPGQSRG-VPRSTLQPDTRRQ 723
L D+GP PP+ P S S P + G VP S L PDTRR+
Sbjct: 509 LNNDQGPQ----PPSSWPVAQSAPVDPSQSSPAREEGEVPESELDPDTRRR 555
>04_01_0175 -
1972361-1972429,1973185-1973334,1974956-1975105,
1975370-1975417,1975717-1975793,1975897-1975999,
1977103-1977233,1978793-1978970,1980656-1980676,
1981233-1981290,1981381-1981444,1982261-1982431,
1982526-1982637,1982779-1983021,1983783-1983964,
1984785-1984920
Length = 630
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 655 SGSKPGQSRGVPRSTLQPDTRRQGVDNTVLTNQEKPP 765
S S P RG+PRS+ P G++N +TN+ P
Sbjct: 40 SSSSPADDRGLPRSSTMPG----GINNVEITNETAGP 72
>06_03_1490 +
30497980-30498102,30499034-30500156,30500914-30501132,
30501228-30501454,30501810-30501884,30502250-30502321,
30502765-30502863,30502975-30503046,30503131-30503245,
30503455-30503523,30503625-30503952,30504320-30504437,
30504522-30505448
Length = 1188
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +1
Query: 655 SGSKPGQSRGVPRSTLQPDTRRQ---GVDNTVLTNQEKP 762
S + PGQ G+P S+++P +R D+ V T ++KP
Sbjct: 492 SRAMPGQHHGMPPSSMKPPPQRPLSLDADDAVRTEKQKP 530
>03_06_0522 -
34494989-34495045,34495171-34495234,34495378-34495494,
34495878-34496032,34496221-34496319,34496464-34496593,
34496727-34496866,34497050-34497239,34497346-34497547,
34497589-34497631
Length = 398
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/23 (69%), Positives = 17/23 (73%), Gaps = 3/23 (13%)
Frame = -3
Query: 182 GNKTRGPLLSGRCTC---CSVIL 123
GNKT GPLLSG C C CS+IL
Sbjct: 103 GNKT-GPLLSGICYCIASCSMIL 124
>09_02_0417 - 8915604-8916779,8916863-8917270
Length = 527
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = +1
Query: 610 PPTKRLPCTLTPDVRSGSKPGQSRGVPRSTLQPDTRRQGVDN 735
PP +P T P SK +G PRS P QG DN
Sbjct: 77 PPAGAMPSTFLPAPVIPSKAPSDQGTPRSITGPG--EQGTDN 116
>07_03_0460 + 18425464-18427473
Length = 669
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 575 WKQTAGPWNFRAHPLNDSPALLHPTSVRGQ 664
WK+ + P + ++ P D P LLH ++RG+
Sbjct: 583 WKKVSLPHDLKSEP--DKPVLLHQEAIRGR 610
>06_03_0339 - 19687749-19690805
Length = 1018
Score = 28.3 bits (60), Expect = 7.1
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = +2
Query: 557 QRSARCWKQTAGPWNFRAHPLNDSPALLHPTSVRGQNPVRVG-GFRGQHYNQTRGARG 727
QRSA WK + P NF S A + + NPV G H RGA G
Sbjct: 229 QRSAGVWKSSGAPQNFPG-----SQANVGQQAQNSANPVHANFGSHNAHVETKRGADG 281
>02_01_0526 -
3830705-3830932,3831684-3831748,3831958-3832104,
3832208-3832256
Length = 162
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 203 RDQTLRRTKMRNHHALPSQEAKEEEDAKENRKKK 304
R++ RR K + + ++A+EEE+ + R+KK
Sbjct: 22 RERKKRRDKKESRRSSRDEQAEEEEEEERRRRKK 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,498,658
Number of Sequences: 37544
Number of extensions: 425043
Number of successful extensions: 1223
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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