Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10840
         (766 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)                 30   1.8  
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)                 28   7.2  
SB_58861| Best HMM Match : SET (HMM E-Value=1.3e-06)                   28   9.5  
SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_5525| Best HMM Match : zf-C3HC4 (HMM E-Value=6.2e-12)               28   9.5  

>SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)
          Length = 321

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 13  PLKLFFENWNRINQLQKRKKVTNNDEIAGQMPVIKRRKIT 132
           P   FF+  NR   ++KRK  ++  E  GQ  VI++ K T
Sbjct: 14  PTCTFFKKSNRSKNVRKRKAESSGSEDEGQTVVIRKEKKT 53


>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1069

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
 Frame = +1

Query: 520 PTRSPRLG-GARTSTICKVLEADRGPMEF*GPPTKRLPCTLTPDVRSGSKPGQSRGVPRS 696
           PT  P +   A T T+ K       P     P  K  P T T    + +KP Q+  +P +
Sbjct: 700 PTNKPSVPTDASTPTLGKTESPTDNPASTGNPALKTTPHTTTRPSEATAKP-QATAIPPA 758

Query: 697 TLQPDTRRQG-VDNTVLTNQEKP 762
           T +P    Q   DN+      KP
Sbjct: 759 TTKPTGSTQSPTDNSPSEKAMKP 781


>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +2

Query: 125 KSPNNKYSGRRARDLSFCSPQTVKTMRDQTLRRTKMRNHHALPSQEAKEEEDAKENRKK 301
           +SP+  +   R+R  S    +     R  T RR + R+H     +  K+E+  K+ ++K
Sbjct: 247 RSPSPHHRSHRSRSRSRSPRRRHSRSRSPTHRRHRSRSHSPEKKKHKKKEKKEKDEKRK 305


>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
          Length = 442

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +2

Query: 125 KSPNNKYSGRRARDLSFCSPQTVKTMRDQTLRRTKMRNHHALPSQEAKEEEDAKENRKKK 304
           K+P++K +   A   +  SP T     ++ LR+ + +    L ++ AKE+E  +  +KK+
Sbjct: 294 KTPSSKTTPADAETKT--SPSTTSPQTNKALRQKEEKEKQRLEAKAAKEKERLEAKQKKE 351


>SB_58861| Best HMM Match : SET (HMM E-Value=1.3e-06)
          Length = 611

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +2

Query: 134 NNKYSGRRARDLSFCSPQTVKTMRDQTLRRTKMRNHHALPSQEAKEEEDAKENRKKKFT 310
           N KYSGR +RD++     T +  R  T   T+       PSQ A   +D   +    F+
Sbjct: 334 NGKYSGRTSRDMA--DDFTWRPPRSAT---TRAHRDRTFPSQTASSNDDDNVSLNSSFS 387


>SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1105

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = +1

Query: 16  LKLFFENWNRINQLQKRKKVTNNDEIAGQMPVIKRRKITEQQVQRPE 156
           L+L  +  + +N+    + V NND++AG    +KR K+ E++ ++ E
Sbjct: 635 LRLTEQERDSVNEATSGRYVDNNDDLAGG---LKRLKLLEEEFRQEE 678


>SB_5525| Best HMM Match : zf-C3HC4 (HMM E-Value=6.2e-12)
          Length = 389

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 31  ENWNRINQLQKRKKVTNNDEIA-GQMPVIKRRKITEQQVQRPESK 162
           E WN I     RK    N  ++  + P  + RK+TEQ+ +R E K
Sbjct: 306 EEWNLIGPTNLRKLGNANLAVSLEKSPKNRLRKVTEQERERVEEK 350


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,907,991
Number of Sequences: 59808
Number of extensions: 456526
Number of successful extensions: 1917
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1914
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)